Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1616 ATGAGTAGTGGCGGAGGCGGAGTGGTGAAGGAGGAGGAGTGCTTGGGTGGAGCAGGTAGCACGGAAGGTTGTCGGCCTCGGCCAATGGAAGGGCTCCACGAAGCAGGCCCGCCTCCCTTCCTCACCAAAACATACGACATCGTGGACGAcccttccaccaatcatatcatCTCGTGGAGCGGAGCTAACAATAGCTTCGTCGTATGGGATCCCAACTCCTTCTCCATCACCCTCCTCCCTAGATTCTTCAAACACAACAATTTCTCCAGCTTCGTCAGGCAGCTTAACACCTACGTTGATCCAGATAAGTGGGAATTTGCAAACGAAGGGTTTCTGAGAGGACAAAAGCATTTGCTGAAGAACATAAGGAGAAGGAAGACACCTCATCATCCTCAATCAGGAATAGATCATAATGCAAGTGTTGTCGAAGTCGGACGGTTCGGATTGGACGGCGAAGTGCACCGGTTAAGGCGCGACAAGCAGGTTTTGATGGTGGAGATAGTGAAGCTGAGGCAGCAGCAGCAGAACACGCGAAGCCGCCTCGACGAAATGGACGGGAGACTGAAGAGGACGGAACAAAAGCAGCAGCAGATGATGAACTTCTTGGCAAGGGCCATGCATAACCCTAGCTTTGTGCATCAATTGATGATGCAGCAGAAGGAATGGAAGAAGAATGGATTGTTGGAAGGGGTTTTCTCCAAGAAGAGGAGAAGAATTAGGgctaatgatgatgatggtgatgatgatcgTCAAGGGCCTAGTAATATTAttgacaacaataataatattagcgtTGAAGATTTCGTGAAACTCGAGGAACTGGAACCTTGTGATCGTGGGTTCGAGGTCTCAGTCTCGGATTTGGATTTGATTAACACGTTGGAGGacgaggaagaagatgatgatgaagaagaagatcgtgataatattaatattaatgatgATGAAGTGTTTTGGCAAGACTTGTTGAATAATgagaatcatcatcatcatcatcttcatcatgaTCGTAATCTAGGTTTTGGAGAGGAAGACGAAGAAGATGTGGATGTGCTCGCTGAACAACTAGGTTATTTGGCCTCGAGCCCTAAAtga 1095 0.4174 MSSGGGGVVKEEECLGGAGSTEGCRPRPMEGLHEAGPPPFLTKTYDIVDDPSTNHIISWSGANNSFVVWDPNSFSITLLPRFFKHNNFSSFVRQLNTYVDPDKWEFANEGFLRGQKHLLKNIRRRKTPHHPQSGIDHNASVVEVGRFGLDGEVHRLRRDKQVLMVEIVKLRQQQQNTRSRLDEMDGRLKRTEQKQQQMMNFLARAMHNPSFVHQLMMQQKEWKKNGLLEGVFSKKRRRIRANDDDGDDDRQGPSNIIDNNNNISVEDFVKLEELEPCDRGFEVSVSDLDLINTLEDEEEDDDEEEDRDNININDDEVFWQDLLNNENHHHHHLHHDRNLGFGEEDEEDVDVLAEQLGYLASSPK 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1616 364 MobiDBLite consensus disorder prediction 239 260 - -
Sto12g1616 364 Gene3D - 32 126 IPR036388 -
Sto12g1616 364 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 23 351 IPR027725 -
Sto12g1616 364 PRINTS Heat shock factor (HSF) domain signature 40 63 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto12g1616 364 PRINTS Heat shock factor (HSF) domain signature 78 90 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto12g1616 364 PRINTS Heat shock factor (HSF) domain signature 91 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto12g1616 364 MobiDBLite consensus disorder prediction 1 38 - -
Sto12g1616 364 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 23 351 - -
Sto12g1616 364 SMART hsfneu3 36 125 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto12g1616 364 Pfam HSF-type DNA-binding 40 125 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto12g1616 364 SUPERFAMILY "Winged helix" DNA-binding domain 36 125 IPR036390 -
Sto12g1616 364 Coils Coil 153 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1616 Sto-Chr12 11528566 11530398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1616 21 362 HSF AT3G22830 50.400 2.61e-107 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sto12g1616 HSF_DNA-bind 1e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1616 K09419 - gmx:100809515 354.755