Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1596 ATGAGAGTGAGAATCAATAGGGCAGATGGAATTGACCATTTGAGCCTCCTCTATGATGTGAACAAAACGAAGCCTTATTATTACGTCAACTATTGGATAAACCCTAAGGAGCAGCATCGTACGAGGTTGATCCAGAGCTTGTATTCCCAGACATGGGACGAGGAGATCACCATCTTGCTCCGGAACGATCCGTTCCGGTACCGGTTCTTGTACCTGGAGGTCATGAGGATATGCGCGAGGTCCGAGCCGGGCACGTCCAACGGGATTACCCTTGTTTCCAAGGGCAGGGTGCCCTTGCCGGACGAACTCGACCGGAAGGATCTCCGTAGGGTCGCGATGATGTCCCTTCGCGAGGACGTGTTCGAGCCTCGTGGGGCCCTTCAAGTGGCCTTGCAAGTCATTCGCCGGCATGGACCTAATGATTTtgatgacgacgacgacgacgacgacgataaCAAAGATGATGTACTAACGATACTCCAAAATGCTTACACAGCACTCCAATCATGGAAGCGCGCAATAACTTCCGATCCCAACGGTTTAACCGTCAACTGGAACGCCGGCGCCGTCGAGGGCGTCTGCAACTACACCGGCGTCTACTGCGCGCCGCCACCCGACGATCCCCACACCGTCGCCGTCGCCGGCATCGACCTCACCGCCGGCGACCTCGCCGGCACCCTCCCGGACTCCCTCGGCCTCCTCGCCGACCTCGCGGTCCTCCACATCGGCTCCAACCGCTTCGCCGGCACGCTCCCGAGCTCCCTCCGCTCCCTCGGCCTCCTCTTCGAGCTTGACGTCGGCAACAACAACCTCTCCGGCCCGTTCCCCGACGTCGTCTTGCATCTCCCTTCCCTGGCGTACCTGGACCTCCGATTCAACTCCTTCTCCGGCGAGGTCCCCCCCGCGCTCTTCGATCTCCCGCATCTCGACGCCCTCTTCCTGAACGACAACGCGTTCCGGTTCCAACTTCCGGAGAACCTCGGGAACTCCGCCGTCTCCGCGCTCGTCCTCGGGAACATCGATCTCGAACGGTGCCGTATCCCGCCGAGCGTCGCCAAGATGAAGGACACGCTGGACGAGATCGTGATCGTGAATAGTAGATTGGGAGGGTGCTTGGGGAGGGAAATTGGGGATCTGGTGAATGTTAGGGTTTTCGATGTGAGCAATAACGAGTTGGTGGGGCCGTTGCCGGAGGAAATTGGGGGGATGGTGAACGTGGAGGTGCTGAACGTGGCGGAGAACAGGATCTCCGGCGAGATCCCGGCGAGTGTGTGCTCGTTGAAGAAGTTGCGGAACTTCGCGCACGGAAACAATTGCTTCACCGGAGCTACGCCGTCGTGTCTGATTAACGGTGGCCGGGGAAATTTTATTCCGGCGACGGCGATGGTGAAGGTGGAAGAATCTGATGAGGATAAATGTAAAAAGCAGCCGATTGATTGCAATGCCTTGAAATGCTCTtga 1461 0.5674 MRVRINRADGIDHLSLLYDVNKTKPYYYVNYWINPKEQHRTRLIQSLYSQTWDEEITILLRNDPFRYRFLYLEVMRICARSEPGTSNGITLVSKGRVPLPDELDRKDLRRVAMMSLREDVFEPRGALQVALQVIRRHGPNDFDDDDDDDDDNKDDVLTILQNAYTALQSWKRAITSDPNGLTVNWNAGAVEGVCNYTGVYCAPPPDDPHTVAVAGIDLTAGDLAGTLPDSLGLLADLAVLHIGSNRFAGTLPSSLRSLGLLFELDVGNNNLSGPFPDVVLHLPSLAYLDLRFNSFSGEVPPALFDLPHLDALFLNDNAFRFQLPENLGNSAVSALVLGNIDLERCRIPPSVAKMKDTLDEIVIVNSRLGGCLGREIGDLVNVRVFDVSNNELVGPLPEEIGGMVNVEVLNVAENRISGEIPASVCSLKKLRNFAHGNNCFTGATPSCLINGGRGNFIPATAMVKVEESDEDKCKKQPIDCNALKCS 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1596 486 SUPERFAMILY L domain-like 163 446 - -
Sto12g1596 486 Gene3D Ribonuclease Inhibitor 163 329 IPR032675 -
Sto12g1596 486 ProSiteProfiles C2 domain profile. 1 112 IPR000008 -
Sto12g1596 486 Pfam Leucine rich repeat N-terminal domain 163 201 IPR013210 -
Sto12g1596 486 Gene3D Ribonuclease Inhibitor 332 455 IPR032675 -
Sto12g1596 486 Pfam Leucine rich repeat 237 294 IPR001611 GO:0005515
Sto12g1596 486 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 159 486 - -
Sto12g1596 486 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 159 486 - -
Sto12g1596 486 CDD C2 1 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1596 Sto-Chr12 11258230 11263046 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1596 160 485 Leucine-rich Repeat extension Gene Families AT3G22800 54.407 1.54e-112 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1596 - - jre:108989444 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1596 12 11258230 11263046 Sto12g1596 12 11258230 11263046 ECH