Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1554 ATGACGACGATGATGTTGGCGAATCGTTTCCAGAACGGTATCGAAACGGCGAAGCTCGTGTGGTCGCGAATTCCGAGCTCGGAGGAACCGCAGTTCCCCGACGACGCCGTTGGACTCTTGAAGAAGAGTGATGGAAGTGGCGTTGAGAGCCTTGACTATGAAGTCATCGAGAATCATGCTTATAGGAAAGAGCAGGCGCTAAGAGGGACGCTGTATGTGGGCTATTTGCTGGTGGTGAAATGGTTCTTTGCCTTGCTAATTGGAGTTGGTACTGGACTTGCTGCGGTTTTCATCAATATTTCTGTTGAAAACTTTGCCGGCTGGAAGTTCTCATTGACTTTTAATATTATTCAGAAATCATATGTGGCTGGATTTATTGTTTATGTCCTGATCAACTTAATTTTGGTCTATTCCTCGGTGTATATCATCTCACAGTTTGCACCAGCAGCTGCTGGATCTGGTATCCCTGAAATCAAGGGTTACTTGAACGGAGCTGATATTCACGGCATCCTTCTTTTTAGAACCTTGATTGGAAAGATATTTGGAAGCATTGGTTCAGTGGGAGGTGGCCTTGCTTTGGGTAAAGAAGGTCCTCTTGTTCATACGGGTGCTTGTATTGCTTCTTTGCTTGGACAAGTAACCTGTGGGTGTGCAGCTGGAGTAGCTGCTGCATTTAGAGCTCCGGTTGGTGGTGTATTGTTTGCATTGGAAGAGGTAACATCTTGGTGGAGGAGTCAACTAATGTGGCGTGTCTTCTTCACTTCTGCTGTTGTGGCTGTTGTGGTGCGAACTGTAATGGGGTGGTGTAAGAGTGGAAATTGTGGACATTTTGGCTCGGGTGGATTCATAATATGGGATACATCAGGGTTAAGATCTGAGCTTTCACCTTTTTTTTACTTCCAATTGAGTACTAAAATTTTACTTCTTTTGCCGTTCTTGACTGGCTTTACTTTTAGTGGTCAAGAGGATTATTCCTTTTCTGAGTTACTGCCGATGGCTGTTATTGGGGTTATTGGAGGTCTTCTAGGAGCCTTGTTTAACCAGCTTACTCTGTATGTAACTTCTTGGCGTCGTAATCATCTGCATAAGAAAGGGGGCCGAGTCAAGATTGTTGAAGCATGCCTTATCTCCTTGTTAACTTCAATTATTTCATTTGGCTTGCCACTTCTAAGAAAATGTAGTCCATGCCCTGAATCTGATCCTGTTTCTGGTATTGAATGTCCACGACCACCTGGAATGTATGGCAATTATGTAAATTTCTTTTGTAGCAAAGACAATGAATACAATGATCTTGCCACGATTTTTTTCAATACACAGGATGATGCGATAAGGAATTTGTTCAGTGCAAAAACAATACATGAGTACAGTGCTCAAAGTCTATTAACTTTTTTGGTTATGTTTTATTCTTTAGCAGTTATAACTTATGGTACTGCAGTTCCAGCCGGTCAGTTTGTTCCTGGAATAATGATAGGATCAACATATGGACGTCTTGTTGGCATGCTTGTTGTAAAATATTATGGAAAGCTCAATATTGAAGAGGGAACGTATGCTCTGCTAGGAGCTGCATCTTTCCTTGGAGGTTCAATGCGAATGACAGTGTCTCTCTGTGTCATTATGGTTGAAATAACTAATAACTTACAACTTTTACCTCTTATTATGCTTGTTCTTCTTATATCTAAGGCCGTTGGTGATGCTTTTAATGAGGGCTTATATGAAGAGCAGGCACGACTGAGGGGCATTCCATTACTAGATTCAAGGCCTAAATATGAGATGCGTAATATGACAGCAAAGGAGGCATGTGGGAGCAGAAGGATGGAGTCCACAACACTCTCCTCAATCATCCTTCATCAAGGGCTTGGGGCATCAATGGGTGTGGCATCCACTCTGGGAAAAATGGGGGTTAAGAATATGCCACCTTTTAACAAAAGTCTACTGAATATGTATGCATTAAATCATGGTAGTAAAATACAGCCTGTTATTATAAGATGCAGGGAAAAGGGGCTACCCGTGGTCTCCTTCCCCCGTGTTGTTAAGGTCGCAGATGTAGTTTCCATTCTGCGGAGCAATGAACACAATGGTTTTCCTGTAATTGATCACACAAGAAGTGGAGAACCACTAGTTATTGGATTAGTCCTTCGGAGctCCAATACCTTTCTTCTGGGCAGTCATCTATTGGTAATTCTGCATTCTAAGATTGATTTCCAGCATAGTCCTTTACCCAGTGATCCCAGAGGTGGGATCAGGCCAATAAGGCATGATTCTGTTGAATTTACTAAGCCTGTTTCTAGTAAAGGAATCTGTATAGATGATATACTTCTAAGTTCAGATGACTTAGAAATGTACGTAGATCTTGCACCTTTTATGAATCCGTCACCATATATTGTGCCTGAAGATATGTCTTTGACAAAGGTGTACAATCTTTTCCGCCAACTTGGTTTGAGGCATTTATTTGTTGTTCCACGCCCATCTCGCGTGCTTGGTTTGATAACAAGAAAAGATTTGTTGATTGAGGATTCTGCATTGTGA 2526 0.4196 MTTMMLANRFQNGIETAKLVWSRIPSSEEPQFPDDAVGLLKKSDGSGVESLDYEVIENHAYRKEQALRGTLYVGYLLVVKWFFALLIGVGTGLAAVFINISVENFAGWKFSLTFNIIQKSYVAGFIVYVLINLILVYSSVYIISQFAPAAAGSGIPEIKGYLNGADIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAVVAVVVRTVMGWCKSGNCGHFGSGGFIIWDTSGLRSELSPFFYFQLSTKILLLLPFLTGFTFSGQEDYSFSELLPMAVIGVIGGLLGALFNQLTLYVTSWRRNHLHKKGGRVKIVEACLISLLTSIISFGLPLLRKCSPCPESDPVSGIECPRPPGMYGNYVNFFCSKDNEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYSLAVITYGTAVPAGQFVPGIMIGSTYGRLVGMLVVKYYGKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLQLLPLIMLVLLISKAVGDAFNEGLYEEQARLRGIPLLDSRPKYEMRNMTAKEACGSRRMESTTLSSIILHQGLGASMGVASTLGKMGVKNMPPFNKSLLNMYALNHGSKIQPVIIRCREKGLPVVSFPRVVKVADVVSILRSNEHNGFPVIDHTRSGEPLVIGLVLRSSNTFLLGSHLLVILHSKIDFQHSPLPSDPRGGIRPIRHDSVEFTKPVSSKGICIDDILLSSDDLEMYVDLAPFMNPSPYIVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVLGLITRKDLLIEDSAL 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1554 841 Gene3D Clc chloride channel 74 585 - -
Sto12g1554 841 Pfam Voltage gated chloride channel 138 563 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Sto12g1554 841 ProSiteProfiles CBS domain profile. 788 841 IPR000644 -
Sto12g1554 841 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 8 607 - -
Sto12g1554 841 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 669 839 - -
Sto12g1554 841 Pfam CBS domain 787 835 IPR000644 -
Sto12g1554 841 SUPERFAMILY CBS-domain pair 669 835 IPR046342 -
Sto12g1554 841 SUPERFAMILY Clc chloride channel 58 585 IPR014743 -
Sto12g1554 841 PRINTS Chloride channel signature 148 165 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Sto12g1554 841 PRINTS Chloride channel signature 179 198 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Sto12g1554 841 PRINTS Chloride channel signature 479 499 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Sto12g1554 841 PRINTS Chloride channel signature 514 530 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Sto12g1554 841 PRINTS Chloride channel signature 532 551 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Sto12g1554 841 PRINTS Chloride channel signature 570 584 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Sto12g1554 841 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 669 839 - -
Sto12g1554 841 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 8 607 - -
Sto12g1554 841 Gene3D - 669 836 IPR046342 -
Sto12g1554 841 SMART cbs_1 669 721 IPR000644 -
Sto12g1554 841 SMART cbs_1 791 839 IPR000644 -
Sto12g1554 841 CDD CBS_pair_voltage-gated_CLC_euk_bac 669 835 - -
Sto12g1554 841 PRINTS Plant CLC chloride channel signature 54 62 IPR002251 GO:0005247|GO:0006821|GO:0016020
Sto12g1554 841 PRINTS Plant CLC chloride channel signature 431 447 IPR002251 GO:0005247|GO:0006821|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1554 Sto-Chr12 10835126 10845030 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1554 5 839 Ion Channels AT5G26240 70.035 0.0 1080
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1554 K05016 - gmx:100811908 1155.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1554 12 10835126 10845030 Sto12g1554 12 10835126 10845030 ECH