Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1532 ATGGCTTCTGCCAACAGAGCCGCCGCAACCTCACTCCCTCCTCCTCGCCTTCTTCAGACTTCCACCGCAAGCAACGCCATCCCCTCTTCTTACCAAACCACCTCCTCTATTCAACCCTTCGGCTGCGTCATTGCCGTCGACGACCCCTCCTTCCGCGTCCTCGCTTACAGCGACAACGCCCGCGATTTGTTCGGCATTACGGCACAATCGGTCCTGACGACGACGACTCTCGAACATTCCGAAGCCCTCGCGATTGGCTCCGACGTACGCACGCTCTTCTCCCCGTTCGGCGCCGCTCTCCTCGAGAAGGCGTTCAACGCGGAGGAGGTGGCCCGGTTCAACCCGATTTGGATCCACGCCAGGACCTCGGGTCGGCCGTTTTACGCGATCCTCCATCGGATCGATGTCGGCGTCGTGATCGATTTGGAGCCCGCGAGGACGGAGGATCCCGCGGTTTCCATCGCCGGGTTGGTACAATCTCAGAAGCTCGCGGGCCGCGCGATTTCCCGATTGCAGCAGCAAACGTCGTCGTTTTCTGATGGCGTCGTGGAGAGCGTGAGGGAGCTTACAGGATGTACCCCTTTTCCTCTGCGCAACACCTGCGAGTTACTTATGCAGGCGTTCGGTCTCCAATTGAATGTGGAACTTCAATTGGCATCACAATTGAAGGAGAATCGAGTCTTGAGGACTCAAACTCTCCTCTGTGACATGCTCCTTCGAGATTCCCCCACGGGGATTCTGACTCAAACGCCTAGTATTATGGACCTTATGAAGTGCGATGGAGCAGCATTCTATTACCAAGGCAACTATTACCCCTTAGGTGTCACCCCAACCGAGTCCCAGGTAAAGGACATTATAAAGTGGCTAAAGGCCTTCCACACAGATTCATCCGGCTTAAGTATTGATAGTCTGGCTGATGCAGGGTACCCCGGGGCTGCCTCTCTCGGCGATGCGGTTTGTGGGATGACCGTTGCTTATGTCACAGAGAAGGATTTCCTGTTCTGGTTCAAATCCAGCACGAAGAAAGAGATCAGATGGGGTGGTGCGAGGCATCAGCCAGAGGAGGAGAGAGATGATGGAGAAATAATCCACCCGCGTTCTTCGTTCAAGGCTTTCTTGGAAGTGGTGAAAGGCCCGAGCTTCGCGCTGGAGAATGTGGAGATGAATGCGATTAACTCTCTGCAGTTCATTTTGCAGGACTCGGTTAGAGAATCCGAGGATAGGAGTTCCAAGTCGGTTGGGTATAAGGAATTGAGAGGGTTGGAGGATCTGAGTTTTATGGTTAAAGAGATGGTGAGATTGATAGAAACTGCCACTGTGCCTGTGTTTGCTGTGGATTTGGATGGACACATAAATGGGTGGAATGCGAAAGTTGCAGAATTGACGGGGCTCTCGGTTGAGGAGGCTATGGGGAAGTCTTTGGTTCATGATCTTGTGTATAAGGAGTCTGAAGAAACTGTAGACAGGCTTCTTTCTCGAGCTTTAAGAGGTGAAGAAGACAAGAATGTAGAGATAAAAATGAGGACATTTGGCCCAGAACATCACAAGATGGCAGTTTTCATAGTGGTAAATGCTTGCTCTAGCAAGAATTACATGAACAATATAGTTGGAGTATGCTTTATTGGCCAGGATGTCACTAGTCAAAAAGTGGTGATGGACAAATTAATCCACTTACAAGGTGATTACAAGGCCATTGTGCATAGCCCAAGTCCTTTGATCCCTCCCATTTTTGCATCAGATGATAACACCTACTGCTCAGAATGGAACACCGCCATGGAAAAGCTCACCGGCTGGCCTCGCGGGGATGTCATCGGGAAATTGCTGATCGGAGAGGTTTTCGGTAAGATTTGTCGGCTGAAGGGTCCGAACGCTCTAACCAAGTTACTGATTATCTTGCACAATGTACTCGATGGACACAACGCCGATAAATTCCCACTTCTGTTCCTTGATCGGCACGGCAACCACGTGCAAGCTCTCTTGACCGCGAAGAAGCGAGTTAGCATCGATGGCCAGACCATTGGGGCATTCTGCTTTCTGCAGATTGCGAGTCCGGAACTTCAAGAGGCTTTGAAAGTGCAGAGGCAGCAGGAGAAGCACTGCTTCGCGGCCATGAAAGAGCTGGCTTACGTTCTTCAGGAAATCAAGAATCCCCTGAATGGGATACGGTTCACGAATTCTCTGTTGGAGGGCACAGTGTTGAGTGATGACCAGAATGAGTTTGTTGAGGCTAGTGCTGCTTGTGAGAAGCAGATGTTCAAGATCATGCAAGATATTGATCTGCAGAGCATCGAGGATGGGTCCTTGGAGCTTGAGAAGGAGGAATTCTTGCTTGGGAATGTGATAAATGCTGTTGTTAGCCAAGTGATGCTATTGCTAAGAGAAAGAAATTTGCAGTTGATTCGTGACATTCCTGAAGAAGTGAAGACACTTGCAGTTTTTGGAGATCAAATGAGGATTCAACAAGTTTTGGCTGATTTCTTAATGAATATGGTGCGCTATGCATCAGCTTCAGATGGGTGGGTAGAGCTTCATGTTGGTCCAAGATTAAAGCAAATTTCTGATAGACTCACTCTTCTCCATGCTAAATTCAGGATGGCATGTCCTGGTGAAGGTCTTCCTCCTGAATTGATCCAAGACATGTTCCATAGCAGTGAGTGGAGAAGTCAGGAAGGGTTAGGGCTGAGTATGAGCAGGAAGATAGTGAAGCTTATGAATGGTGAAGTCCAATACATCAGAGAGGCAGAAAGATGCTACTTCTTAATCATTCTTGAACTACCCTTGATTCAGTGGGAAACTAGCTCTAAAACCTTATGA 2814 0.4932 MASANRAAATSLPPPRLLQTSTASNAIPSSYQTTSSIQPFGCVIAVDDPSFRVLAYSDNARDLFGITAQSVLTTTTLEHSEALAIGSDVRTLFSPFGAALLEKAFNAEEVARFNPIWIHARTSGRPFYAILHRIDVGVVIDLEPARTEDPAVSIAGLVQSQKLAGRAISRLQQQTSSFSDGVVESVRELTGCTPFPLRNTCELLMQAFGLQLNVELQLASQLKENRVLRTQTLLCDMLLRDSPTGILTQTPSIMDLMKCDGAAFYYQGNYYPLGVTPTESQVKDIIKWLKAFHTDSSGLSIDSLADAGYPGAASLGDAVCGMTVAYVTEKDFLFWFKSSTKKEIRWGGARHQPEEERDDGEIIHPRSSFKAFLEVVKGPSFALENVEMNAINSLQFILQDSVRESEDRSSKSVGYKELRGLEDLSFMVKEMVRLIETATVPVFAVDLDGHINGWNAKVAELTGLSVEEAMGKSLVHDLVYKESEETVDRLLSRALRGEEDKNVEIKMRTFGPEHHKMAVFIVVNACSSKNYMNNIVGVCFIGQDVTSQKVVMDKLIHLQGDYKAIVHSPSPLIPPIFASDDNTYCSEWNTAMEKLTGWPRGDVIGKLLIGEVFGKICRLKGPNALTKLLIILHNVLDGHNADKFPLLFLDRHGNHVQALLTAKKRVSIDGQTIGAFCFLQIASPELQEALKVQRQQEKHCFAAMKELAYVLQEIKNPLNGIRFTNSLLEGTVLSDDQNEFVEASAACEKQMFKIMQDIDLQSIEDGSLELEKEEFLLGNVINAVVSQVMLLLRERNLQLIRDIPEEVKTLAVFGDQMRIQQVLADFLMNMVRYASASDGWVELHVGPRLKQISDRLTLLHAKFRMACPGEGLPPELIQDMFHSSEWRSQEGLGLSMSRKIVKLMNGEVQYIREAERCYFLIILELPLIQWETSSKTL 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1532 937 ProSiteProfiles PAS repeat profile. 561 639 IPR000014 -
Sto12g1532 937 Gene3D - 221 395 IPR043150 -
Sto12g1532 937 ProSiteProfiles Histidine kinase domain profile. 709 929 IPR005467 -
Sto12g1532 937 SUPERFAMILY GAF domain-like 224 404 - -
Sto12g1532 937 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 814 921 IPR003594 -
Sto12g1532 937 CDD HisKA 707 758 IPR003661 GO:0000155|GO:0007165
Sto12g1532 937 Gene3D PAS domain 421 561 - -
Sto12g1532 937 SMART HKATPase_4 814 929 IPR003594 -
Sto12g1532 937 Pfam PAS fold 430 545 IPR013767 GO:0006355
Sto12g1532 937 Pfam PAS fold 561 680 IPR013767 GO:0006355
Sto12g1532 937 SMART HisKA_10 703 766 IPR003661 GO:0000155|GO:0007165
Sto12g1532 937 CDD PAS 438 545 IPR000014 -
Sto12g1532 937 Pfam His Kinase A (phospho-acceptor) domain 707 766 IPR003661 GO:0000155|GO:0007165
Sto12g1532 937 CDD HATPase_Phy-like 813 925 IPR044767 -
Sto12g1532 937 TIGRFAM sensory_box: PAS domain S-box protein 434 549 IPR000014 -
Sto12g1532 937 SUPERFAMILY PYP-like sensor domain (PAS domain) 33 148 IPR035965 -
Sto12g1532 937 SUPERFAMILY PYP-like sensor domain (PAS domain) 575 677 IPR035965 -
Sto12g1532 937 SMART pas_2 429 496 IPR000014 -
Sto12g1532 937 SMART pas_2 560 630 IPR000014 -
Sto12g1532 937 Pfam PAS fold 32 145 IPR013654 GO:0006355
Sto12g1532 937 CDD PAS 572 680 IPR000014 -
Sto12g1532 937 Gene3D - 766 929 IPR036890 -
Sto12g1532 937 Pfam Phytochrome region 229 405 IPR013515 GO:0006355|GO:0009584
Sto12g1532 937 PANTHER PHYTOCHROME 31 191 - -
Sto12g1532 937 PANTHER PHYTOCHROME 192 931 - -
Sto12g1532 937 SUPERFAMILY PYP-like sensor domain (PAS domain) 434 541 IPR035965 -
Sto12g1532 937 ProSiteProfiles PAS repeat profile. 427 498 IPR000014 -
Sto12g1532 937 PANTHER TWO-COMPONENT HISTIDINE KINASE 192 931 - -
Sto12g1532 937 PANTHER TWO-COMPONENT HISTIDINE KINASE 31 191 - -
Sto12g1532 937 Gene3D - 683 765 - -
Sto12g1532 937 Gene3D PAS domain 32 176 - -
Sto12g1532 937 Gene3D - 193 378 IPR029016 -
Sto12g1532 937 Gene3D PAS domain 574 682 - -
Sto12g1532 937 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 777 923 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1532 Sto-Chr12 10612297 10618929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1532 192 927 Histidine Kinase Gene Family AT4G16250 66.577 0.0 1058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1532 K12121 - gmx:100794865 1164.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1532 12 10612297 10618929 Sto12g1532 12 10612297 10618929 ECH