Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1519 ATGGCAGCAACAACAACCACGATTCTCACCCGTATCGTCACTCCAGAGCTCCCTCCCGCTTCTCCGACGCTCCCTTCAGCCACCCcggtggcggtggcggtggtCGCCACCGTGCTTTTGACAGTCCGCCCCGCCGCTCTCCCGGACGAGGTGCAGCAACCGCTGTCTGGTCAGAAACGAGGGTTTCCCTTTTCTGGACCCGGAGAGTCGCCGGATCGTTTTGATGGGGGAAGTTTTGCCAAACTTTTCGTTGGATCTGTTCCACGGACAGTTACTGAAGAAGATATTCGCCCTTTGTTTGAGGAACACGGGAATGTGATTGAGGTTGCTCTGATCAAAGATAGGAAGACAGGACAGCAACAAgGTTGTTGTTTCATAAAGTATGCTTCTCCAGATGAAGCCGAACGGGCAATTAAAGCATTGCACAATCAACATATTCTTCCTGGAGGTGTTGGTCCAATCCAAGTGAGATATGCTGATGGTGAACGAGAACGGCTTGGTGCAGTTGAATACAAATTGTTTGTGGGTTCTCTGAACAAACAGGCTTCAGTGAAGGAAGTTGAGGAGATTTTCTCAAAATATGGACGGGTTGAAGATGTTTATCTTATGCGTGATGAGATGAAGCAAAGCCGTGGATGTGGCTTTGTTAAATACTCTAACAGAGATATGGCACTGGAAGCTATAAATGCACTTAATGGAATTTATACAATGAGAGGCTGTGATCAACCTTTAACTGTTCGATTTGCTGATCCTAAGAGACCTCGGCAAGgggattcaagGAGTCCTGCATTTGATCCAAGATTTGACGCACCGGGTCCTAGGGGTCCGGCATTTGGTCCAAGATTTGAAGCGCCAGGTCCTAGACCTCCGCCCCATGTTACTGATCCTATGGGTGATCGAGCTGCTGCCCCCAATGCTTGGCGATCGATGCATCCACCAAATATTGGGTCATTCTCTAACTCTGGTCTTAATAACATGAGGCCTTCATTGCTTCCAAGATCTGGCGACATGGACATTGCATTGTCTATGAATGCAGGTGGTCCTATGAGTGGCATTAGAGGCCCCTCAGATGGGTTTTTTCAAAGACAGGCTCTGTCATCGATGTCACAACAGAATTTCAACCAACCCATGCCACAAATTCCACCAGCTGGCCAACAAATATCACCATTGCAGAAGTCTATTCAATCACCTCAGGACAAGCCACCTTCCCTCCAGTTGTACCCTCCAGCCCCAATTCCCTACTCACAAATGTCGCCTCTTGCATCACAAAGGCAGGTTGGCCAGCCACAGTTTCCTCCTGCTGGTCCTCTTCCTTCACAACAGGCACATGACATAAATGGACAGTTTCCAGTTTCTCAGCTTCAAGCTCAGCAGAGTGCTTCATCGGCTGCAATGGCCCTTGGACAGGCCCCTCTTGATACCAGCTTGCAAACTAATACAACATTGGCTGCTTCAAATCTACAGCAACTCTCTACCTCTATGCAGCAGCAGTCATTTCAGCCTCCGCAGCAGTCCCCTTCTCAGTTGGCACAAATTTTGTCACAACAAACCCAGACATTGCAAGCAAGCTTTCATTCATCTCAGAAGGCCTTCTCCCAGCTCCAACAACAACTTCAGATGATGCAACCATCTAGTCAAGGTTTAACATTGCAGCAAAACGCAGAATATATGAAAAAGCAGACTCATTGGATGGGGGCTGTACCACAGTCAGTGGCTAGCACTGCTGCTGCTGCACCGGCTGTCGATGTGCCTTCATCCACGTCTGCTGCTTCTGCTGTACCTGCAACAAGCCAGAACACAACTCCTGCAAAAAGTAATTGGACAGAGCATGTATCTCCTGAGGGCTTCAAGTACTATTACAATAGTGTCACTGGTGAAAGTCGGTGGGAGAAACCTGAGGAGTTGACATTATCTGAAAAGCAAAGGCCATCTTTTCAGCAATCACAAAATCAGTCGCAGCCTCCAATATCACCTGCCCAGCAAGTTCCACAAATGCAACAGTTGCAGCCTCAGGGTCATCTCCAAGGGCAGGTTCCTTCCCAGCAACAGTACCAGCAATATGGAGTTACAGGTCATCAGAATGTTCAGGACTCTTATAGAATGGATGCTACTACTCAAGCACAGTCAAGTGGAATTATCAGAGTTGGTAATACCTTACCTTACCTTAATAAGGGAGTCTATGTCTCAGGATTCAGGAATCTGTGCCCTTTGCCTGATGTCTAA 2223 0.4719 MAATTTTILTRIVTPELPPASPTLPSATPVAVAVVATVLLTVRPAALPDEVQQPLSGQKRGFPFSGPGESPDRFDGGSFAKLFVGSVPRTVTEEDIRPLFEEHGNVIEVALIKDRKTGQQQGCCFIKYASPDEAERAIKALHNQHILPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQASVKEVEEIFSKYGRVEDVYLMRDEMKQSRGCGFVKYSNRDMALEAINALNGIYTMRGCDQPLTVRFADPKRPRQGDSRSPAFDPRFDAPGPRGPAFGPRFEAPGPRPPPHVTDPMGDRAAAPNAWRSMHPPNIGSFSNSGLNNMRPSLLPRSGDMDIALSMNAGGPMSGIRGPSDGFFQRQALSSMSQQNFNQPMPQIPPAGQQISPLQKSIQSPQDKPPSLQLYPPAPIPYSQMSPLASQRQVGQPQFPPAGPLPSQQAHDINGQFPVSQLQAQQSASSAAMALGQAPLDTSLQTNTTLAASNLQQLSTSMQQQSFQPPQQSPSQLAQILSQQTQTLQASFHSSQKAFSQLQQQLQMMQPSSQGLTLQQNAEYMKKQTHWMGAVPQSVASTAAAAPAVDVPSSTSAASAVPATSQNTTPAKSNWTEHVSPEGFKYYYNSVTGESRWEKPEELTLSEKQRPSFQQSQNQSQPPISPAQQVPQMQQLQPQGHLQGQVPSQQQYQQYGVTGHQNVQDSYRMDATTQAQSSGIIRVGNTLPYLNKGVYVSGFRNLCPLPDV 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1519 740 PANTHER TRANSFORMER-2-RELATED 48 686 - -
Sto12g1519 740 MobiDBLite consensus disorder prediction 587 608 - -
Sto12g1519 740 ProSitePatterns WW/rsp5/WWP domain signature. 607 632 IPR001202 GO:0005515
Sto12g1519 740 ProSiteProfiles WW/rsp5/WWP domain profile. 601 634 IPR001202 GO:0005515
Sto12g1519 740 SMART rrm1_1 81 157 IPR000504 GO:0003723
Sto12g1519 740 SMART rrm1_1 172 247 IPR000504 GO:0003723
Sto12g1519 740 MobiDBLite consensus disorder prediction 278 294 - -
Sto12g1519 740 Gene3D - 77 166 IPR012677 -
Sto12g1519 740 PANTHER FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 48 686 - -
Sto12g1519 740 MobiDBLite consensus disorder prediction 639 680 - -
Sto12g1519 740 SUPERFAMILY RNA-binding domain, RBD 171 274 IPR035979 GO:0003676
Sto12g1519 740 SUPERFAMILY RNA-binding domain, RBD 63 165 IPR035979 GO:0003676
Sto12g1519 740 Gene3D - 167 259 IPR012677 -
Sto12g1519 740 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 161 IPR000504 GO:0003723
Sto12g1519 740 PRINTS Paraneoplastic encephalomyelitis antigen family signature 80 95 IPR002343 GO:0003723|GO:1990904
Sto12g1519 740 PRINTS Paraneoplastic encephalomyelitis antigen family signature 176 191 IPR002343 GO:0003723|GO:1990904
Sto12g1519 740 PRINTS Paraneoplastic encephalomyelitis antigen family signature 191 203 IPR002343 GO:0003723|GO:1990904
Sto12g1519 740 PRINTS Paraneoplastic encephalomyelitis antigen family signature 232 249 IPR002343 GO:0003723|GO:1990904
Sto12g1519 740 SUPERFAMILY WW domain 606 637 IPR036020 GO:0005515
Sto12g1519 740 Pfam WW domain 605 632 IPR001202 GO:0005515
Sto12g1519 740 SMART ww_5 602 634 IPR001202 GO:0005515
Sto12g1519 740 MobiDBLite consensus disorder prediction 372 444 - -
Sto12g1519 740 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 251 IPR000504 GO:0003723
Sto12g1519 740 MobiDBLite consensus disorder prediction 247 295 - -
Sto12g1519 740 Gene3D - 600 648 - -
Sto12g1519 740 MobiDBLite consensus disorder prediction 587 609 - -
Sto12g1519 740 CDD RRM2_FCA 172 251 IPR034645 -
Sto12g1519 740 CDD WW 604 634 IPR001202 GO:0005515
Sto12g1519 740 MobiDBLite consensus disorder prediction 631 680 - -
Sto12g1519 740 MobiDBLite consensus disorder prediction 51 70 - -
Sto12g1519 740 MobiDBLite consensus disorder prediction 372 401 - -
Sto12g1519 740 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 145 IPR000504 GO:0003723
Sto12g1519 740 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 173 239 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1519 Sto-Chr12 10483855 10492855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1519 63 278 Eukaryotic Initiation Factors Gene Family AT2G23350 25.532 2.43e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1519 - - gmx:100798390 745.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1519 12 10483855 10492855 Sto12g1519 12 10483855 10492855 ECH