Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1485 ATGAAACCATTTCTCTTGTCGAATCACGCTGATACCGACTTCAATTGCTCACACCTTGATCATAATCACTCAATGGCTCGAGTTCCTTATCCATATGGCGATCCTTTTTTTAATGGTTCATTAGTTTCTTACGGACCGCAGGCTATGATTCAACCCCAAATTGTGCCTCAGATGCTGGGATTACAATCCGCCAGAGTTGCATTACCTCTCGATCTTGCAGAAGACGGGCCCATTTATGTCAATGCAAAACAATACCATGGAATACTTAGGAGGCGACAGTCACGAGCAAAGCTTGAGGCTCAAAACAAACTCATCAAAAATCGAAAGCCATATCTTCACGAGTCTCGGCACCGCCATGCTTTGAACCGGGTTAGGGGAACCGGGGGACGCTTTCTCAGCACCAAACAGCTTCAGCCATCCAAAACAGACTTTGTCCCCAGTGCCAATTCCGGCTCGGACTCCGTCAACTTGTACCAAAAGATAGATGCATCAGAGGCGGAGGCCCATCCCTCGAGAATCGGCGAAAATGCATCTTCCGTCTCAACCTGCTCCGACATGACAAGTGTGTCCAGTATCAACAATGTCAATTTCCGGCAGCCGGAGCGCAAGTTCTTGGGGAACTCACCAAACATGAGCGGTGCATCGCAGTGCAGCGGGGGACTCACCTTTGGCGGGACCCAGCATCGCGCATCGATTGTCCGGTGA 705 0.4993 MKPFLLSNHADTDFNCSHLDHNHSMARVPYPYGDPFFNGSLVSYGPQAMIQPQIVPQMLGLQSARVALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKNRKPYLHESRHRHALNRVRGTGGRFLSTKQLQPSKTDFVPSANSGSDSVNLYQKIDASEAEAHPSRIGENASSVSTCSDMTSVSSINNVNFRQPERKFLGNSPNMSGASQCSGGLTFGGTQHRASIVR 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1485 234 Gene3D - 74 136 - -
Sto12g1485 234 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 77 131 IPR001289 GO:0003700|GO:0006355
Sto12g1485 234 PRINTS CCAAT-binding transcription factor subunit B signature 77 99 IPR001289 GO:0003700|GO:0006355
Sto12g1485 234 PRINTS CCAAT-binding transcription factor subunit B signature 108 131 IPR001289 GO:0003700|GO:0006355
Sto12g1485 234 ProSiteProfiles NF-YA/HAP2 family profile. 74 134 IPR001289 GO:0003700|GO:0006355
Sto12g1485 234 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 1 224 - -
Sto12g1485 234 SMART cbf3 73 134 IPR001289 GO:0003700|GO:0006355
Sto12g1485 234 ProSitePatterns NF-YA/HAP2 subunit signature. 79 99 IPR018362 GO:0003677|GO:0016602
Sto12g1485 234 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 224 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1485 Sto-Chr12 10213244 10214870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1485 24 140 CCAAT-HAP2 Transcription Factor Family AT1G17590 61.017 1.08e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Sto12g1485 CBFB_NFYA 2.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1485 K08064 - gmx:100793856 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1485 12 10213244 10214870 Sto12g1485 12 10213244 10214870 ECH