Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1482 ATGGACGGAGGAGGAGCCCAGTACAACCCTCGCACCGTCGAGGAGGTTTTCAGAGACTTCAAGGGTCGTAGGGCTGGCATGATCAAGGCTCTCACTACTGATGTGGAGGAATTCTACCAGCAGTGCGACCCCGAAAAGGAGAATCTTTGCCTGTATGGATCCCCTAATGAGCAATGGGAAGTTAACTTACCTGCTGAAGAAGTTCCTCCTGAACTTCCGGAGCCTGCATTGGGCATAAACTTTGCGAGGGATGGAATGCAGGAGAAGGACTGGCTGTCTTTGGTTGCTGTTCACAGTGATGCATGGTTACTTGCAGTGGCATTCTATTTTGGGGCAAGATTTGGTTTTGATAAAGCAGACAGGAAGCGCCTGTTTACCATGATTAATGATCTGCCTACAATTTTTGAGGTTGTGACTGGAACTGCAAAGAAACAATCAAAGGAAAAGTCATCAAATTCAAACCACATCAGCAGCAAGTCAAAGTCTGGCTCAAAGGGGCGAGGGTCTGAATCAGGAAAGTATGCGAAGCCAGCGAAGGACGAGGATGAGGTTTTGGATGAAGAAGAGGATGAAGAGCATGGGGAGACCTTGTGTGGCGCATGTGGGGAGAACTATGCATCTGATGAATTCTGGATTTGCTGCGACATATGTGAGAAGTGGTTTCACGGCAAGTGTGTGAAGATCACTCCTGCCCGGGCCGAGCACATCAAGCAGTATAAGTGCCCCTCGTGCAGCAATAAGAGAGCACGGCCTTAA 756 0.4894 MDGGGAQYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGSPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFTMINDLPTIFEVVTGTAKKQSKEKSSNSNHISSKSKSGSKGRGSESGKYAKPAKDEDEVLDEEEDEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1482 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 246 IPR013083 -
Sto12g1482 251 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 5 251 - -
Sto12g1482 251 MobiDBLite consensus disorder prediction 145 190 - -
Sto12g1482 251 SMART PHD_3 197 245 IPR001965 -
Sto12g1482 251 PANTHER CPG BINDING PROTEIN 5 251 IPR045104 GO:0006355|GO:0042393
Sto12g1482 251 Pfam Alfin 12 140 IPR021998 GO:0006355|GO:0042393
Sto12g1482 251 Pfam PHD-finger 198 247 IPR019787 -
Sto12g1482 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Sto12g1482 251 MobiDBLite consensus disorder prediction 145 167 - -
Sto12g1482 251 CDD PHD_AL_plant 197 247 IPR044104 -
Sto12g1482 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Sto12g1482 251 SUPERFAMILY FYVE/PHD zinc finger 187 248 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1482 Sto-Chr12 10192923 10196142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1482 1 250 Alfin-like Transcription Factor Family AT3G42790 76.587 2.18e-127 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Sto12g1482 Alfin 4.2e-70 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1482 - - cpap:110817645 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1482 12 10192923 10196142 Sto12g1482 12 10192923 10196142 ECH