Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sto12g1473 | ATGGTTTGGTTTCAATGCGAGGATTGTGGGGACAATCTGAAGAAGCCCAAGTTGCCGAACCATTTCAGGACCTGTTCCGCTTCCAAGTTGTCTTGCATTGATTGTGGAGAAATATTTGGGCAAGCCACTGTTCAGCAACATACACAGTGTATTACCGAAGCGgAAAAGTATGGTCCAAAAGGCCAAGGCAAAACTTTGAATGCTACAACCGCCACTCCTAAAAAGGATAACAAGCAAAAGCCTGAAGTTGACATTCATGTTGGGTTATCAGAAAGGCCTCCATGGTTTTGTAGTCTCTGCAATACAAAAGCTACTAGTAAGCAAACACTTCTCCTCCATGCTGATGGAAAGAAACATAGGGCAAAAGCTCGTGCGTTTCATGCTGCAAAGCAACAACCAAACCAAACAGAGACATCTGCTCCTGATGCAAAGCCTCCAGTGGAAAATTCGTCTAATGGTGAAGTGCAAGTTAACAATATTGTAGATCAGTCAAAATTGCAAGATCCAGCTAAACACAATAACTTGAAATCTGAGAATGAAATTTCTCCATCAAATAAAAAGAGGAAACTTGATGCAGTGGAAGATAGCCCTAAGAGGAAAAAGGGCAGGGATAATGCATCAGTTGAGATGGGAAATGGGGAAGTAATTCAGGGTGAAAGAGAAGAAGCAGCTGAAAAAGAGAGcaatAAGAATATTAAATGGAAGAAGTTTATCAAATCAGCTTTGAAATCtCATCCTGATGGAAAATTgaagatgaagaaattgagAAAACTAGTTTCCAAAGCCTTGCAGGAATCTGGCATTGTAGTGGATGAAACTGAACTTAGTGAGGCTCTTGAGCAGAAGATCAATTCGAGTTCTAAATTTGCAGTTGAGAACAAGTATGTGCATTTGGTGGCCAAGGAATAA | 909 | 0.3971 | MVWFQCEDCGDNLKKPKLPNHFRTCSASKLSCIDCGEIFGQATVQQHTQCITEAEKYGPKGQGKTLNATTATPKKDNKQKPEVDIHVGLSERPPWFCSLCNTKATSKQTLLLHADGKKHRAKARAFHAAKQQPNQTETSAPDAKPPVENSSNGEVQVNNIVDQSKLQDPAKHNNLKSENEISPSNKKRKLDAVEDSPKRKKGRDNASVEMGNGEVIQGEREEAAEKESNKNIKWKKFIKSALKSHPDGKLKMKKLRKLVSKALQESGIVVDETELSEALEQKINSSSKFAVENKYVHLVAKE | 302 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sto12g1473 | 302 | MobiDBLite | consensus disorder prediction | 215 | 230 | - | - | |
| Sto12g1473 | 302 | Pfam | LYAR-type C2HC zinc finger | 30 | 57 | IPR014898 | - | |
| Sto12g1473 | 302 | ProSiteProfiles | Zinc finger C2HC LYAR-type profile. | 27 | 51 | - | - | |
| Sto12g1473 | 302 | SUPERFAMILY | beta-beta-alpha zinc fingers | 1 | 26 | IPR036236 | - | |
| Sto12g1473 | 302 | SUPERFAMILY | beta-beta-alpha zinc fingers | 81 | 129 | IPR036236 | - | |
| Sto12g1473 | 302 | MobiDBLite | consensus disorder prediction | 129 | 168 | - | - | |
| Sto12g1473 | 302 | Gene3D | - | 1 | 50 | - | - | |
| Sto12g1473 | 302 | ProSiteProfiles | Zinc finger C2HC LYAR-type profile. | 1 | 26 | - | - | |
| Sto12g1473 | 302 | Gene3D | Classic Zinc Finger | 89 | 132 | - | - | |
| Sto12g1473 | 302 | MobiDBLite | consensus disorder prediction | 115 | 230 | - | - | |
| Sto12g1473 | 302 | MobiDBLite | consensus disorder prediction | 57 | 80 | - | - | |
| Sto12g1473 | 302 | PANTHER | CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR | 1 | 299 | IPR039999 | GO:0003677 | |
| Sto12g1473 | 302 | SMART | ZnF_U1_5 | 92 | 126 | IPR003604 | GO:0003676|GO:0008270 | |
| Sto12g1473 | 302 | SUPERFAMILY | beta-beta-alpha zinc fingers | 30 | 58 | IPR036236 | - | |
| Sto12g1473 | 302 | MobiDBLite | consensus disorder prediction | 169 | 207 | - | - | |
| Sto12g1473 | 302 | Pfam | Zinc-finger of C2H2 type | 95 | 119 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sto12g1473 | 52 | 200 | C2H2 Transcription Factor Family | AT2G19380 | 37.255 | 2.23e-19 | 86.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sto12g1473 | K15263 | - | gmx:100790703 | 423.705 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Sto12g1473 | 12 | 10111583 | 10114231 | Sto12g1473 | 12 | 10111583 | 10114231 | ECH |