Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1444 ATGGGAGGAGTAGCAATGGTCAAATCGGAGCACGTAATGGTATCTGAGGACGACGACGACAACGTTCCTTCGAATTCTGGTGGTTCCTGTGATGATGATGTTGAAGGTGAATCACACGACGACGGTTTCAGTGAGGGATTGCACGAGGCTGGCCCTCCGCCGTTCCTCAAGAAGACCTTCGAAATGGTGGAGGATCCGGAGACCGACCCGATCGTGTCGTGGAGCGAAACTCGTGAGAGCTTCGTTGTTTGGGATTCTCACGAATTCTCCAAAATTCTTCTGCCCAAGTACTTTAAACACAGCAATTTCTCCAGCTTCATTCGTCAGCTTAACACATACGGTTTTCGGAAGATTGATTCAGACCGTTGGGAGTTTGCAAATGAAGGATTTCAAGGAGGAAAGAAGCATTTGCTGAAGAACATAAGGAGAAGAAGCAAGTACAACAAACTCCAGCAGCAAGGAGGAGCATTCACTTCCATGAAGCCTGGCCTGGAGGCTGAAGTTGAGAAACTGAAGAAGGATCAGAACATAATGAAAGTGGAAATTCTGAAGCTGAGACAGCAGCAAGAGAATTCACAGGTTCAGCTCATAAATGTTCAAGAGCGAGTTCGGTCTGCTGAGATGAAGCAATACCAAATGCTATTTTTCCTCACCAAAATGGCCAGAAAGCCCACCTTGGTTCAACAGCTAATCCAGAAGATAAAGCGAAAAAGAGAGCTTGATGGCGGCGAGATCAGTAAGAGACCTAGATTGCTTGGAAGCCATTGCCCTGTGAGCTTACCTAAGGTCATGGACACCATTCCTGATGGTGATTACAGACAAGGTCATAGAGATTTGACTTCATTGCAATCAGAGCTCACTGGACTACTGTCTGATACTATGAACAAGGGCAGAATGGAGCCTCCAGCCCCTTCTCCTCTATCAGATGAACTATGCAGCTCTGTACAAGGCTTAAGGGGCAATGCTTCCAAAGCAAGTGGCAATGATGTATCTTCTGCCTGTTGTTTCATGTCAGAAAAATTAATGGAAGAGAACTCTAACGTTGATGATGAACTAGATGTGAATGACTCGAATATCTATCTTGAATTGGAGGATCTGATTAGCAAACCAGCTGATTGGGTCGGATCTGCAAGTGGATTGGTGGGGCAAACTGGTTGTATCTGA 1164 0.4579 MGGVAMVKSEHVMVSEDDDDNVPSNSGGSCDDDVEGESHDDGFSEGLHEAGPPPFLKKTFEMVEDPETDPIVSWSETRESFVVWDSHEFSKILLPKYFKHSNFSSFIRQLNTYGFRKIDSDRWEFANEGFQGGKKHLLKNIRRRSKYNKLQQQGGAFTSMKPGLEAEVEKLKKDQNIMKVEILKLRQQQENSQVQLINVQERVRSAEMKQYQMLFFLTKMARKPTLVQQLIQKIKRKRELDGGEISKRPRLLGSHCPVSLPKVMDTIPDGDYRQGHRDLTSLQSELTGLLSDTMNKGRMEPPAPSPLSDELCSSVQGLRGNASKASGNDVSSACCFMSEKLMEENSNVDDELDVNDSNIYLELEDLISKPADWVGSASGLVGQTGCI 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1444 387 PRINTS Heat shock factor (HSF) domain signature 55 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto12g1444 387 PRINTS Heat shock factor (HSF) domain signature 93 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto12g1444 387 PRINTS Heat shock factor (HSF) domain signature 106 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto12g1444 387 SMART hsfneu3 51 144 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto12g1444 387 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-9 39 369 - -
Sto12g1444 387 Gene3D - 47 145 IPR036388 -
Sto12g1444 387 Coils Coil 168 188 - -
Sto12g1444 387 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 39 369 IPR027725 -
Sto12g1444 387 ProSitePatterns HSF-type DNA-binding domain signature. 94 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto12g1444 387 SUPERFAMILY "Winged helix" DNA-binding domain 51 144 IPR036390 -
Sto12g1444 387 MobiDBLite consensus disorder prediction 1 50 - -
Sto12g1444 387 Pfam HSF-type DNA-binding 55 144 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1444 Sto-Chr12 9853710 9855388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1444 45 373 HSF AT2G26150 41.317 3.62e-79 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sto12g1444 HSF_DNA-bind 1.4e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1444 K09419 - gmx:100818430 523.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1444 12 9853710 9855388 Sto12g1444 12 9853710 9855388 ECH