Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1443 ATGGGTTCTCTTCCTACTACTGGAGAGGGTGAGtctgagaaggaagaagaacatAGTCAAAAGGTTCCTGAAGCAATACAAATTTCTGTTGATCAAGGTATGAATATTGAAGCATTGAAAAATATTAAGCATGGGACACAAGACAATGAAATGGAGCTGATGAATACAATTTGCACTGCAATGGGTTCTCTTCCTACTACTGGAGAGGGTGAAtttgagaaggaagaagaacatAGTCAAAAGGTCCCTGAAGCAATACAAATTTCTGTTGATCAAGGTATGAATATTGAAGCATTGAAAAATATTAAGCATGGGACACAAGAAAATGAAATGGAGTTGATTAATACAATTTGTGCTGCAATGGGTTCTCTTCCTACTACTGGAGAGGGTGAGTCtgagaaggaaaaagaacaTGGTCAAAAGGTCCCTGAAGCAATACAAATTTCTGTTGATCAGTGTATGAATATTGAAGCACTGAAAAATATTAAGCATGGGACACAAGAAAATGAAATGGAGTTGATGAATACAATTTGTGCTGCTATGGGTTCTCTTCCTACTACTGGAGAGGGTGAGTCTGAGAAGGAAGAAGAGCATGGTCTAAAGGTCCCTGAAGCAATTGAAATTTCTGTTGATCAGGGTACGAATATTGAAGCATTGAAAAATGTAAACCATGGGACtgaagaaaaggaaatggaGTTGGTGAATACAGTTTGTGCTGCAATAAATTCTCTTCCAACTACTGCAGAGGATGAGTTTAAGAAGGAAGAACAACATAGTCAAAAGGCTACTGAAGCATTGAATTTAAGTATGAAGCATGagaaacaacaaaaagaaatggaattggTGAAACTGATTTCTGCTGCAATGGGTTCTCTTCCTGCTACTGAAGAGGGTAAGTTAGAGAAGATGGAACAACATGGTCAAAAGGTTCCTGAAGCAATGGACTTTTCTGTAGATCAGGGTATGACTAGTGAAGAAGCATTTAATTTAAGTGAACATGGTGGAGATAGGATGCCATTACTGGACATTGATATTTTGGAAGCTAAATGTATAATGCAGCAAGAAAAAGAGCAACCACAAAAAATTAGTGCAAATGATGCAACAACATTTTCCAATAATCCAAATGAGGAAGGAGACACTGAAGAGGGAGAAATTTCAGGTGACCTTCAAATGGATGAAAATTCATTTGATACATCTTCTGCAGATTCTTTAATGTTACAGCAAAGGAAAGATGAGGTTCAGAAGCCCGAAAATAGTGGACAAATAGAACCTAGGACAAGTGATAAAAATGGATTTCCAAGTGGAGTTGATATGAGAATCTCTAGGGAAGTGATTAATTACGGTGACTTAGTTGATCATGGTTCTGTGTTAGAGACTGGAAAAACTTACAACAGAGACAGTAGAATTCAAGAGGCTGTTGACTTACCAGCATCTTTGGCTTACAACCAAGTCCAAAGAGGCTTCATGGAAGAAGAAGCCACCGAAGATCATCAGAACGCACCAGCAGTTCTTCTCAGTATTTTCTCTTTAGGAATGAAGGAAGCTGGCGTCAACTGTAAGAAAAAGCGTGGTCCAATTACTGAGGAAGGGAAAGCTAAAAAGAAGGAAAAGAAACGAAAACAGCGGGCAGAAAAGAACAGAAAACTTGGTGTTAAAAGGTTGAAGTTGCTTCCAGTGCAGAAACCGAAAACTATTTCATATTGCCGCCATTATGTCAAAGGAAGGTGCTATGAGgGTGACAAGTGCAAGTATTCACATGATATAGTGCCTGAGACGAAATCCAAGCCATGTTGTCATTTTGCTCGTCACTCTTGCATGAAAGGGGATGACTGTCCATTTGATCATCAGCTCTCCAAGTATCCTTGTAGCAATTTTGTGACCAAAGGTTCTTGCAGCAGAGGTGGTGCTTGTATGTTTTCACACCAGACGTCAACCAAGCAAGATATTCCTACATCTTCAAATGATAGTAAACCCGGGATGAAGCCTCAACTCCTGTTAGGAAATACAAAATTGACTAGGCCACATAACATCAGTGGTAGTAGTGCTTCCCAGCAAAAACGCCTATCTGATTCTAAGGAAATTCAATCTCATATCAATTCAGGGCAGCAGCTGCCAGATAATGTACACAAACCACCAACAACGACACCGAAAGGAATTAGtttcatcaatttttcgaaTTCATCGTTGCCCAGCCCTAGTACTCCAAAACAAGGCATGGTGACCCCAAACAAGGAAAGCGATGTCAAAACTGGGACCCATGTAAACCAAGGTGCATTGGGAACGGCTCAAAACTTGGGGGAGAATCCTAAGAAAAAGGCAGCTGTGGCACCCAAGGGAAttaactttctttcttttggaaGAGGTCGAGTTTCCAGTTCCAAAAGCCCTGTCTGCTCTTTTTTTAATAGGGAAAGTGGTATCAACTTGTCTAAAAAATACAAGTTTGGTTCGCCTGAACTGTCAACTTCATCTGGAAGAAAGGCCTCAGTGGACCATTCCACTAATGAAGTAAAGGCATATACTTCTCAGATCTCAACTATGACATCATCTTTGCTCTCAGTCTCTCCTTTTGTTTCGGGTCAATCTTCGGAACGCCTAGCATCTGGACATCAAAAACTCGTATTTAACTCATCCCAAAGGGCACTGTTATCAACTTTATCATTTGCTGCTCAGCATGAGTCAGATATTAAGATGAAATGCTCTGCTGGTGCATCAGCCATAAAGTCAGAGGCGAAAAAGCATATCAGCATGAATTGCTCGGTAATTATGGCACTTCCTGCTGAGGGCAAGAAAACCAGAGGGTTGTTTGCCGGTGTTCTGTGCTGTGCCGTAGTCCACCAGCAGCACAGTTTGGGACTTGTTTTTCTATTCTCCCTCCTTGCTGCAACATTGCAGGTGATGCAGATCTTTATGGCAACAAACAAATTTGCAGCAATTTGTTACAACTTACACCATAGCATCATCTCCAGTCCTCCTACCTGTTTCCCCTGCAAAAAATGGATTCCAAGTATACCGGCCGTGTCGATACTTGGGAAAACGAACCAGATGTCGGACACTTGTTAG 3063 0.3924 MGSLPTTGEGESEKEEEHSQKVPEAIQISVDQGMNIEALKNIKHGTQDNEMELMNTICTAMGSLPTTGEGEFEKEEEHSQKVPEAIQISVDQGMNIEALKNIKHGTQENEMELINTICAAMGSLPTTGEGESEKEKEHGQKVPEAIQISVDQCMNIEALKNIKHGTQENEMELMNTICAAMGSLPTTGEGESEKEEEHGLKVPEAIEISVDQGTNIEALKNVNHGTEEKEMELVNTVCAAINSLPTTAEDEFKKEEQHSQKATEALNLSMKHEKQQKEMELVKLISAAMGSLPATEEGKLEKMEQHGQKVPEAMDFSVDQGMTSEEAFNLSEHGGDRMPLLDIDILEAKCIMQQEKEQPQKISANDATTFSNNPNEEGDTEEGEISGDLQMDENSFDTSSADSLMLQQRKDEVQKPENSGQIEPRTSDKNGFPSGVDMRISREVINYGDLVDHGSVLETGKTYNRDSRIQEAVDLPASLAYNQVQRGFMEEEATEDHQNAPAVLLSIFSLGMKEAGVNCKKKRGPITEEGKAKKKEKKRKQRAEKNRKLGVKRLKLLPVQKPKTISYCRHYVKGRCYEGDKCKYSHDIVPETKSKPCCHFARHSCMKGDDCPFDHQLSKYPCSNFVTKGSCSRGGACMFSHQTSTKQDIPTSSNDSKPGMKPQLLLGNTKLTRPHNISGSSASQQKRLSDSKEIQSHINSGQQLPDNVHKPPTTTPKGISFINFSNSSLPSPSTPKQGMVTPNKESDVKTGTHVNQGALGTAQNLGENPKKKAAVAPKGINFLSFGRGRVSSSKSPVCSFFNRESGINLSKKYKFGSPELSTSSGRKASVDHSTNEVKAYTSQISTMTSSLLSVSPFVSGQSSERLASGHQKLVFNSSQRALLSTLSFAAQHESDIKMKCSAGASAIKSEAKKHISMNCSVIMALPAEGKKTRGLFAGVLCCAVVHQQHSLGLVFLFSLLAATLQVMQIFMATNKFAAICYNLHHSIISSPPTCFPCKKWIPSIPAVSILGKTNQMSDTC 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1443 1020 MobiDBLite consensus disorder prediction 356 376 - -
Sto12g1443 1020 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 330 912 IPR045124 GO:0003723|GO:0045892
Sto12g1443 1020 PANTHER PROTEIN SUPPRESSOR OF SABLE 330 912 - -
Sto12g1443 1020 MobiDBLite consensus disorder prediction 1 25 - -
Sto12g1443 1020 SUPERFAMILY CCCH zinc finger 620 647 IPR036855 GO:0046872
Sto12g1443 1020 MobiDBLite consensus disorder prediction 522 548 - -
Sto12g1443 1020 MobiDBLite consensus disorder prediction 643 659 - -
Sto12g1443 1020 MobiDBLite consensus disorder prediction 409 434 - -
Sto12g1443 1020 ProSiteProfiles Zinc finger C3H1-type profile. 562 589 IPR000571 GO:0046872
Sto12g1443 1020 ProSiteProfiles Zinc finger C3H1-type profile. 591 618 IPR000571 GO:0046872
Sto12g1443 1020 SUPERFAMILY CCCH zinc finger 562 587 IPR036855 GO:0046872
Sto12g1443 1020 MobiDBLite consensus disorder prediction 643 751 - -
Sto12g1443 1020 ProSiteProfiles Zinc finger C3H1-type profile. 621 644 IPR000571 GO:0046872
Sto12g1443 1020 SMART c3hfinal6 619 643 IPR000571 GO:0046872
Sto12g1443 1020 SMART c3hfinal6 563 588 IPR000571 GO:0046872
Sto12g1443 1020 SMART c3hfinal6 591 617 IPR000571 GO:0046872
Sto12g1443 1020 Coils Coil 526 546 - -
Sto12g1443 1020 Pfam CCCH-type zinc finger 568 587 IPR041367 -
Sto12g1443 1020 Gene3D - 558 620 - -
Sto12g1443 1020 MobiDBLite consensus disorder prediction 356 384 - -
Sto12g1443 1020 MobiDBLite consensus disorder prediction 669 751 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto12g1443 zf-CCCH_4 1.2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1443 - - aprc:113854397 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1443 12 9840452 9846592 Sto12g1443 12 9840452 9846592 ECH