Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1438 ATGCACCCCATGGACGCTGTCTTCTCCCTCCCTGGACCTGCCAGAACCAACTTCCTGCGCTCTATAGCGCACTCTTGTGCCTGCTCTTACATTTGCCTTTGGTCCTATCAATTTGATCATTCCCTCTTATCCAATCATTTGAGGTTCTTGGATGGTTTGTACAACGTAGGAATCAGCCAACCAAGTTCTTCTGTGGTGGTGGGGAGTACTACTCTAGCTCAAAcgctttttaatcagtttagaGGCTTAGTGTTTGATGTCAATGACGACCGTATTCCAGGTTTAGCTTTTAAAAACAGAAGTCATTACTTAGAGCTGCAGCAATCAGATCTTCTAAGGCTGGCATGGACACAAATACAAACACAGTTTTATCAGGAGGCAAGAATTAAGACTGCCGTTTTCATGGGGTGCAACAATGGGGAAATTGAGCTTGGATTCTCCACCATTTCTCAAGCTGATATTCAAACAGCACTTAGCAATTGGTTCCCAGATGAGTTTTCCAGATCACAATCATCTCAGCAGCAGCATCCAAACATTGATCAGAATCAGAACCCACCTACATCATCTTCATCCTCCTTGAGATCACTCTCACTCTCCACAGGCAGCCCTGAATGCTCCTCCCTCCTCTTCACCACCATTAATCCTGTAGCATCTTCCTCCCACCACTTTCCTCCTCCTGAAACTCTTGCTTCTTCAAGCCCTCACCAGCAAGCCATACAAGCACTAGCTCAGGCCACCACACAGAGCCCATTCCCCACACCAGTGAGTACTAGTGACCATGATGCCATCATCATGAGAGCCATCCTTCAAGTCATTTCTAATCCATCACCTTCTTCTTCAACCtcccttcctcctcctcctcctcctcctcctcatcaacTTCAAAATCCACCCCACCAGGACCATCAGAATTTGCCTTACATGGGGGTCCACCCTGAGGCGGCCAGTGCTTTCAAGAGGTACAGGACTCCTCCCATTACATCCCCATTAATGGCGTCAGATTTGCGCAGACAGAGCCTGTTCAAGAGGTCATTGACATTCTTTAGAAGCTTGAATTTCATGAGAATGAGAGAACGTAGTGTTCTTCATACCACTCGCCCCACTAGTAGTACTCAGCTTCACCACATGATTTCTGAGAGAAGAAGGCGTGAGAAGCTCAATGAGAACTTTCAGGCTCTTAGATCTCTGCTTCCTCCAGGAACTAAGAAAGACAAAGCATCAATACTTACAATAGCGAAGGAGACAGTGAGTTCATTAATGGCGGAGATTGAAAAACTTAGAGAAAGAAACAAGCAATTGGaggaatcatcatcatcatcatcaataatGGCTGCTCCTCCTTCATCCAAAGAAGCCAAAGCTAGTAGTGATCATAATCATGAAGTGATCATACCAAATGAGAGGCTAAGTGTACGAGTTTCACACGAACCAGAATCGAGCTCTTCGGAAGAGAGAATCATAGATTTGGATGTGACTGTGAGGGGCCAAAATTCACAAGTTGATGTACTGATTCGATTATTGGGATTCCTAAGGCAGCAAGATCAGAATTTGAGCTTGATTTCCATGGAAGCTAATACACATTTAGCACATGAAACTTCCTTCAATCGAGGAAGTGAACGGGACGAGTCTGCCTTCCAGGAAGCAGTGAGAAGAGTTGTTGCTGACCTGGCACAGTGA 1677 0.4329 MHPMDAVFSLPGPARTNFLRSIAHSCACSYICLWSYQFDHSLLSNHLRFLDGLYNVGISQPSSSVVVGSTTLAQTLFNQFRGLVFDVNDDRIPGLAFKNRSHYLELQQSDLLRLAWTQIQTQFYQEARIKTAVFMGCNNGEIELGFSTISQADIQTALSNWFPDEFSRSQSSQQQHPNIDQNQNPPTSSSSSLRSLSLSTGSPECSSLLFTTINPVASSSHHFPPPETLASSSPHQQAIQALAQATTQSPFPTPVSTSDHDAIIMRAILQVISNPSPSSSTSLPPPPPPPPHQLQNPPHQDHQNLPYMGVHPEAASAFKRYRTPPITSPLMASDLRRQSLFKRSLTFFRSLNFMRMRERSVLHTTRPTSSTQLHHMISERRRREKLNENFQALRSLLPPGTKKDKASILTIAKETVSSLMAEIEKLRERNKQLEESSSSSSIMAAPPSSKEAKASSDHNHEVIIPNERLSVRVSHEPESSSSEERIIDLDVTVRGQNSQVDVLIRLLGFLRQQDQNLSLISMEANTHLAHETSFNRGSERDESAFQEAVRRVVADLAQ 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1438 558 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 4 556 - -
Sto12g1438 558 MobiDBLite consensus disorder prediction 279 296 - -
Sto12g1438 558 MobiDBLite consensus disorder prediction 219 256 - -
Sto12g1438 558 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 4 556 IPR044658 -
Sto12g1438 558 MobiDBLite consensus disorder prediction 165 199 - -
Sto12g1438 558 MobiDBLite consensus disorder prediction 219 258 - -
Sto12g1438 558 MobiDBLite consensus disorder prediction 274 305 - -
Sto12g1438 558 Gene3D - 369 443 IPR036638 GO:0046983
Sto12g1438 558 Coils Coil 409 436 - -
Sto12g1438 558 Pfam Helix-loop-helix DNA-binding domain 374 419 IPR011598 GO:0046983
Sto12g1438 558 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 370 419 IPR011598 GO:0046983
Sto12g1438 558 MobiDBLite consensus disorder prediction 453 467 - -
Sto12g1438 558 CDD bHLH_AtbHLH_like 375 427 IPR045239 -
Sto12g1438 558 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 370 439 IPR036638 GO:0046983
Sto12g1438 558 MobiDBLite consensus disorder prediction 428 467 - -
Sto12g1438 558 SMART finulus 376 425 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1438 Sto-Chr12 9811428 9816056 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1438 315 557 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 44.803 5.67e-50 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto12g1438 HLH 1.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1438 - - gmx:100807098 501.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1438 12 9811428 9816056 Sto12g1438 12 9811428 9816056 ECH