Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1434 ATGGCTCCTAGAATCCTCCTATGCGGCGACGTTTTGGGCCGCCTCAACCAGCTCTTCAAGCGTGTCTCATCTGTCAACAAATCGGCTGGTCCATTCGATGCGCTCTTCTGCGTGGGCCAATTCTTCCCCGACTCGCCGGACCAGCTCGATGAGTTCATGGGCTACATTGAGGGTCGAACGCAGGTTCCTCTTCCCACTTACTTCATCGGCGACTATGGCGTTGGTGCCCCTAAAGTCCTATTGGCGGCTTCTAAGGATTCGGCGAACCGTGGCTTCAAGATGGACGGCTTGAAGGTTTGCGAGAATTTGTATTGGTTGAAAGGCAGTGGCAAATTCACCATCTTGGGGTTAAATGTAGCCTATTTATCTGGTAGACAATCATCAAATGCTCAACAGTTTGGAACTTACAGTCAAGATGACATTGATGCTTTGCGAGCAATAGCTGAGGAGCCTGGAATAATCGATTTGTTCTTGACATATCCATATATTTATCTATCACTAATGAATGGCCAAGTGGGATCACAAATAGAGCAACTGAATCAGATATTCCTGCGGGACTCTCAGATTCCACAGGGAGCGATTCAACCATATCAGAGTACTAAAGGTATATACTATGCCCGTGAACCTTATTCTAACGTTGAAGCCATGCATGTGACTCGTTTCATAGGGCTTGCTTCTGTTGGAAACAAAGATAAGCAGAAATTTATTCATGCAATTTCTCCTACACCTGCATCTACCATGTCTTCATCTGAAATTGCCATGAAAACAACGAATACCACCTTATCGCCGTATACATTTGTGGACAAAACTTCTCCTAAGGAAGCTGCAAAGAGATCCAGTGATAGTGTCTCTGATTCTCAGTACTGGAGATATGATGTCTCTCAAAAGCGACATAAACATGGAGCTGGAGATGGTGATAAGTTGTGTTTTAAATTTGTATCTTCTGGTTCTTGTCCAAGGGAAGAGAAGTGCAATTTTCGACATGATTTAGATGCAAGGGAACAGTGTAAGAGAGGtgtttgttttgattttttgaACAAGGGGAAATGTGAAAGAGGTCCAGATTGCAACTTTAAGCACACCTTGCTGAATGAAGGAGAGATTTTTGCTCACAGGAGATCAAAGGAGTGCTGGTTTTGCTTGTCAAGCCCCAATGTGGAGTCACATTTGATCATTAGCATTGGAGAAAATTATTACTGTGCACTGGCTAAAGGCCCACTTGTTGAAGACCATGTGCTGATAATACCCGTTGAGCATTTGCCAAGTACCCTATCACTGTCGGTGGAATCAGATGTTGAGCTTTGTAAACTCCAGAACAGTCTCAAGATGTACTGCAAGAATCAAGGAAAGCAAGTCATCTTTTTTGAATGGGCTTCCAGACGTAGTACTCATGCCAATCTTCAGGTTGTTCCTATCCCGTCTTCCAAAGCAATCATGGTTGAAAAAGTATTCAATTTAGCAGCAGAAAGACTGGGATTTAAATTTGTGGCTAAGAAATTTGATAGCAATTCTGATGGAAGAAAATTTTTGAGGACACAAATTGATGGAAATTCAAGTTTATTCTATGTTGAACTCCCAGGAAGCACAATACTGTTGCATCGGGTTGAAGATACTGAGAAATTTCCTGCCCAGTTTGGTCGTGAGGTCGTATCAGGGTTGCTCAATATAGCAGACAAGGCAGATTGGAAGAATTGCAAATATAGCAAAgaggaagaaacaaaaattacTCAGGATTTTAAGAGTCGATTTCAAGAATATGATCCAAACTGTTGA 1773 0.4185 MAPRILLCGDVLGRLNQLFKRVSSVNKSAGPFDALFCVGQFFPDSPDQLDEFMGYIEGRTQVPLPTYFIGDYGVGAPKVLLAASKDSANRGFKMDGLKVCENLYWLKGSGKFTILGLNVAYLSGRQSSNAQQFGTYSQDDIDALRAIAEEPGIIDLFLTYPYIYLSLMNGQVGSQIEQLNQIFLRDSQIPQGAIQPYQSTKGIYYAREPYSNVEAMHVTRFIGLASVGNKDKQKFIHAISPTPASTMSSSEIAMKTTNTTLSPYTFVDKTSPKEAAKRSSDSVSDSQYWRYDVSQKRHKHGAGDGDKLCFKFVSSGSCPREEKCNFRHDLDAREQCKRGVCFDFLNKGKCERGPDCNFKHTLLNEGEIFAHRRSKECWFCLSSPNVESHLIISIGENYYCALAKGPLVEDHVLIIPVEHLPSTLSLSVESDVELCKLQNSLKMYCKNQGKQVIFFEWASRRSTHANLQVVPIPSSKAIMVEKVFNLAAERLGFKFVAKKFDSNSDGRKFLRTQIDGNSSLFYVELPGSTILLHRVEDTEKFPAQFGREVVSGLLNIADKADWKNCKYSKEEETKITQDFKSRFQEYDPNC 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1434 590 SUPERFAMILY CCCH zinc finger 307 332 IPR036855 GO:0046872
Sto12g1434 590 Gene3D - 292 362 - -
Sto12g1434 590 SUPERFAMILY HIT-like 375 472 IPR036265 -
Sto12g1434 590 CDD MPP_CWF19_N 6 227 - -
Sto12g1434 590 ProSiteProfiles Zinc finger C3H1-type profile. 335 363 IPR000571 GO:0046872
Sto12g1434 590 Pfam Protein similar to CwfJ C-terminus 1 372 484 IPR006768 -
Sto12g1434 590 Gene3D - 371 491 IPR036265 -
Sto12g1434 590 Pfam Protein similar to CwfJ C-terminus 2 508 587 IPR006767 -
Sto12g1434 590 SMART c3hfinal6 337 362 IPR000571 GO:0046872
Sto12g1434 590 SMART c3hfinal6 305 330 IPR000571 GO:0046872
Sto12g1434 590 PANTHER CWF19-LIKE PROTEIN 1 1 589 - -
Sto12g1434 590 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 1 589 IPR040194 -
Sto12g1434 590 ProSiteProfiles Zinc finger C3H1-type profile. 303 331 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto12g1434 CwfJ_C_1 1.5e-36 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1434 K24939 - gmx:100782106 920.228
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1434 12 9773880 9778441 Sto12g1434 12 9773880 9778441 ECH