Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1424 ATGGGATTCGGGGTTAGGAAGGATTATGCCAACAAGAGCAAAAAAGATGggctaaaagaaaaagataagagGGATCATTTAGTAGTTAATCCTCGACGTGAGACAAGAACTGATTGCAAAGCAAGAATATGCCTTGTTGTTCAAAATGGGAAGTTCAGAGTGAAGGACTTTATAGAGGAGCACAATCATGTACTCCATATTGCGGAAACTACATACATGCTAGTTTCTCAACGATGCATGTCTGATGTCCATTCACATGAAATTGAGTTGGCAGATGATTTTGGGATCCAACAAAGAGCCACTTTTGCACCGATGAACAATCATGTTGAGGGACGAGCTAATCTTGGATGTACGCATTTGGATCAGAAGAACTATCTTTGCTCCCAACGGCAAAAGAGTTTGAAGTATGGGGAAGCTGGTTGTTTATTAGGTCATTTCCAAGATCAGTTCTCGGCAAATCCATCATTCTTTCATGCATATCAGATGGACTTGGATGAAAAAATAACTAACATATTTTGGGCCGATGCAAGAATGCTACTAGACTATGACTACTTTGGTGATGTTGTCTCTCTCGACACGGCATACTGCACTAACAATGCACATAGGCCGCTTGCCTTGTTTTCTGGATTTAATCATCACAGAGGAGTTGTTTTTTTTGGAGCTGCATTGTTATATGACGAAACAACAGCATCATACAAGTGGTTATTTGAGACATTCTTGAAGGCACATAATCAGAAAAAGCCTCAGACCATCTTCACTAATCATGATCAAGCACTGACTAAAGCCCTACATGAGTGTGAATTAGAGGCAACAGAAAAATTGCCAATATTGAGATGTCCTAGCTCGCCCATGCTGAAACAACTTGCAAAAGTCTACACTCCTACAATTTTTGACATGTTCCAAGATCAATTTGACTTAAAGGAGGCTTGTTGTGTAAAGCAGAGAAAGGAAAGTGAGCCATTGTTTGAATACGTCATTTATATGGTTGACCATGAAGGAGGATGGAAAGTTTTGTTTCATCCTCAAGAGAAGTCAATTTCTTGCAGTTGTAGGAGGTTTGAGACTTTTGGTATAGTGTGTTGCCATGTTCTGAAAGTGTTTGATGTCAACGATGTCAAGAAACTTCCCGATCAGTACATTTTTAAAAGGTGGACAAAGGAGGCTAGAATTGGTGCTATACATGATGTTAAAGGGAAGGAAGTTGAGGAAGACCTGAAATTGAGTCGTACGCATCGATATAAAAACCTTTGCCAAAGTTTTGTCAAGCTAGCATCTGAAGTTTCAGGGAGTGTAGAAGAAGTCTCTTTAGTTCGTTCAGCAATGGACGAAGTGACCAAGAAAATCATGGCACTTCGTTTGGAAAAAATACAAGTAACAAACGAGAGAAATGATCCTATAACATCTAATAGCATCGACATGTCACAACCAACCAACATCAAGAAGATGCTTGAACTTAAGAAAAGGAGGACCACCAGAGTGAAAGACCAATCTCTCTTGGAGTACTAA 1506 0.3918 MGFGVRKDYANKSKKDGLKEKDKRDHLVVNPRRETRTDCKARICLVVQNGKFRVKDFIEEHNHVLHIAETTYMLVSQRCMSDVHSHEIELADDFGIQQRATFAPMNNHVEGRANLGCTHLDQKNYLCSQRQKSLKYGEAGCLLGHFQDQFSANPSFFHAYQMDLDEKITNIFWADARMLLDYDYFGDVVSLDTAYCTNNAHRPLALFSGFNHHRGVVFFGAALLYDETTASYKWLFETFLKAHNQKKPQTIFTNHDQALTKALHECELEATEKLPILRCPSSPMLKQLAKVYTPTIFDMFQDQFDLKEACCVKQRKESEPLFEYVIYMVDHEGGWKVLFHPQEKSISCSCRRFETFGIVCCHVLKVFDVNDVKKLPDQYIFKRWTKEARIGAIHDVKGKEVEEDLKLSRTHRYKNLCQSFVKLASEVSGSVEEVSLVRSAMDEVTKKIMALRLEKIQVTNERNDPITSNSIDMSQPTNIKKMLELKKRRTTRVKDQSLLEY 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1424 501 Coils Coil 441 461 - -
Sto12g1424 501 PANTHER OS03G0181600 PROTEIN 14 264 - -
Sto12g1424 501 PANTHER OS03G0181600 PROTEIN 276 454 - -
Sto12g1424 501 Pfam MULE transposase domain 188 266 IPR018289 -
Sto12g1424 501 ProSiteProfiles Zinc finger SWIM-type profile. 335 371 IPR007527 GO:0008270
Sto12g1424 501 Pfam FAR1 DNA-binding domain 14 65 IPR004330 -
Sto12g1424 501 Pfam SWIM zinc finger 343 368 IPR007527 GO:0008270
Sto12g1424 501 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 276 454 IPR031052 GO:0006355
Sto12g1424 501 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 14 264 IPR031052 GO:0006355
Sto12g1424 501 SMART 26again6 346 373 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1424 Sto-Chr12 9684648 9686760 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sto12g1424 MULE 5.8e-16 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1424 - - cam:101507947 441.425