Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1406 ATGGCTTGTTCTGCCATTTGTCCAAGTGTAAAAAGCTCCTTTACTTGGAATTTCCATAAAGCTCAACATGTCAACCGTGCTGTTAAATTCCACAGATCCCTTCGAAGAACTGCATCTACTGAGCTTTtcattaggatttttaatttgattgaaaTCCCCAAAGATAATCCAAGTTCACCGTATCGCCGTCGCCACAATGACGATATAGAGGCCGGAAGTAGGTACCGCGCTAACGACGATGACGAGTTTGAGGATTTGTTACACTTAGATCCCTTTGATATCCCCCGCACCACAAAGAATGCTCCAGTTGAACGCCTCAAGCGGCATGTAAAACTTCCTCTAGGTACTCCTGTTGGTGATTTTCCAATTGGAACAGAGCTGCTTACTTCATTTTCAAGGGATCATAGAATTGACGTCTTGCAGGATTGTGGAGGAGTCAAAGGGTTGGTGGATTTGTTGAAAAGCAACGTAGAGAAGGGGATTCAAGGTGACGACGCTGATTTAATAAAACGGAGGAATGcctttggttcaaacaattatCCTCGAAAGAAGGGAAGGAATTTCTTGTTGTTCATGTGGGATGCTTGCAAGGATCTGACCTTGATTATATTGATGATAGCAGCAGTGGTTTTATTGGCACTGGGAATAAAATCTGAGGGTTCCAAGGAAGGATGGGTTGATGGGGGAAGCATCGCATTTGCAATTATTCTTGTTATTGTTGTTACAGCTATAAGTGATTATAAGGAGGCTGTTCAGTTTCAAGGTCTAAATGAGGAGAAGAGAAACATAAATATAGAGGTCAGCCATGAGCAGGTTATTAGAAATGGTAGAAGAGTTAAGATCTCAATATTTGATATTGCTGTTGGTGATGTTGTGCCCCTTAATATCGGTGACCAGGTCCCTGCTGATGGAATCTATATAACCGGTCACTCTCTTGCAATTGATGAATCAAGTATGACTGGGGAGAGCAAGATTGTTCACAAGGACTCAAAGGATCCATTTCTGATGTCTGGATGCAAAGTTGCAGATGGCACTGGCACTATGCTGGTTACAGCTGTTGGTATTAATACTGAGTGGGGGCTTCTAATGGCTAGTACATCAGAAGACAATGGTGAAGAAACACCTTTGCAGGTATATTTAAATGCCCTTGCCACCTTTATTGGTATTGTTGGACTCATTGTGGCTGCTGTTGTCCTCATTGTGCTATTGATCAGATTCTTTACTGGACATATTGCAAAAAGTGTTCAATTTGAGATGGGAAAGACAAAAGTCGGTAATACTATTCATGGAGTAACTAAGATAGTTGCAGTTGTGGTCACCATTGTAGTGGTTTCGGTGCTTGAAGGGCTTCCTTTAGCAGTCACCTTAATACTTGCTTACTCGATGACAAAAATGATGGGAGATAAAGCTTTGGTAAGGAGGCTTTCAGCCTCTGAAACAATGGGTTCTGCCACAACCATTTGCAGTGATAAAACTGGAACACTGACTTTGAATCAGATGACTGTGGTTGAGGCTTACGTTGGTGGGAAGAAGATTGATCCTCCTCACAACAAATTGAAGCTCTCAGCTCAGCTCTGCACTTTGGTTGTTGAAGGTGTTGCACAGAACACCAATGGCAGTGTTTATGTCCCTGAGAGTGGTGACAATGTTGAGGTCTATGGATCACCTACGGAAAAGGCAATTTTAAATTGGGGAATTCAGCTAGGGATGAATTTCAAGGCTATTAGATCAGAATCATCAATTATACACATGTTTCCATTCAATTCAGAAAAAAAACGCAGCGGAGTTGCAGTGCAGATGCCTGACTCTCAAGTTCATATACATTGGAAAGGGGCTGCTGAGATAGTACTAGCCTGTTGTACATCATATATGGATGCAAATGACCAGTTAGTTGAGATGGATGAAGAGAAGATAAGTAGTTTTAAACAAGCTATTGAAGACATGGCTGCTAGTAGTCTGCGTTGTGTTGCCATTGCATATAGATTATATGAGAAGGAAAATGTTCCAACTAGTGAAGAAGAACTTGCTTGCTGGTTTTTACCAGATGGTGATCTTGTTTTATTGGCTATTGTTGGTCTCAAGGATCCTTGTCGACCTGGTGTCAAGGATGCAGTGCAAATTTGCCAAAAAGCCGGAGTAAAGGTGCAAATCGTAACTGGTGACAATGTGCATACTGCAAAAGCAATTGCTCTGGAATGCGGAATACTTAATTCACTAGATGCCGCTGAGCCAATCGTCATCGAAGGAAAAGTATTTCGTGCATTGCCTGATACGCAGAGGGATGAGATTGCCGAAAAGATATTGAGGAAGGGGCATGTTGTGGCTGTAACTGGGGATGGAACTAATGATGCTCCTGCACTTCATGAGGCTGATGTAGGACTTGCAATGGGTATTCAAGGGACTGAAGTTGCTAAAGAGAGCTCTGATATCATTATTTTGGATGACGATTTTGCTTCAGTTGTAAAGGTTGTGAAATGGGGGCGTTCTGTATATGCAAATATTCAGAAAATTATTCAGTTTCAGCTAACAATCAATGTGACGGCTCTTTTTACAAATGTTGTCGCTGCAGTTTTCTCCGGCGAGGTCCTGTTAAATACAGTGCAGTTTCTGTGGGTAATTCTGATTATGGATACACTTGGAGCACTAGCCTTAGCAACTGAACCACCAACTGAGCAACTAATGGACAGCCCTCCAGTGGGTCGAAGAGAACGCCTcataaagaaaatcaagtggaAGAGTTTGCTCGTACAGGCAGTCTCCCAAGCATTTTCTTTGCTTTTATTGCATTTCCGAGGTATAAGCTTACTCAGTCTGAAACCTGACATCAAAGGCCATGCTATCAAGAACACTATAATATTTAACACATTTGTTTTCTTTCAGctctctaatttatttaatgcTGGAAAGCCAGATCAACACAACATATTCAAAGGAATCACAAGGAACTACTTCTTTATGGGGATAGTGATTATAACTCTTTTGTTTCAGATTATCATCATTGAATTTCTGGGAAAATTCACCAAAACAGTAAGGCTTAATTGGAAGCAGTGGATGGTTTCTATCATCCTTGGGAGCAGTGGATCAATAATTCTGTCAGCACTGGATGTAGTAGAAACTTCCCTCTCTTGCTTGCTGGGATCACACTTTCCTGTCACATTTGTAGCAGTCAGGTCAGATATACTTGCTTGTCAATCTCCGAAGTCACGGGTCATGACCCGGTGCACAAGGCTCTCAACAGTTGGGGTGTATACGGAGACCATGTTTGGCACCTTCACTATTGGTACATTCCCTTTAGATGATGATGGTAATGCCTCAGGAGGCGTTGTTCTTGTCACACTCACCAACCCATTTAGGGTGCTTAGGAAATCATCAATATCATAG 3381 0.4114 MACSAICPSVKSSFTWNFHKAQHVNRAVKFHRSLRRTASTELFIRIFNLIEIPKDNPSSPYRRRHNDDIEAGSRYRANDDDEFEDLLHLDPFDIPRTTKNAPVERLKRHVKLPLGTPVGDFPIGTELLTSFSRDHRIDVLQDCGGVKGLVDLLKSNVEKGIQGDDADLIKRRNAFGSNNYPRKKGRNFLLFMWDACKDLTLIILMIAAVVLLALGIKSEGSKEGWVDGGSIAFAIILVIVVTAISDYKEAVQFQGLNEEKRNINIEVSHEQVIRNGRRVKISIFDIAVGDVVPLNIGDQVPADGIYITGHSLAIDESSMTGESKIVHKDSKDPFLMSGCKVADGTGTMLVTAVGINTEWGLLMASTSEDNGEETPLQVYLNALATFIGIVGLIVAAVVLIVLLIRFFTGHIAKSVQFEMGKTKVGNTIHGVTKIVAVVVTIVVVSVLEGLPLAVTLILAYSMTKMMGDKALVRRLSASETMGSATTICSDKTGTLTLNQMTVVEAYVGGKKIDPPHNKLKLSAQLCTLVVEGVAQNTNGSVYVPESGDNVEVYGSPTEKAILNWGIQLGMNFKAIRSESSIIHMFPFNSEKKRSGVAVQMPDSQVHIHWKGAAEIVLACCTSYMDANDQLVEMDEEKISSFKQAIEDMAASSLRCVAIAYRLYEKENVPTSEEELACWFLPDGDLVLLAIVGLKDPCRPGVKDAVQICQKAGVKVQIVTGDNVHTAKAIALECGILNSLDAAEPIVIEGKVFRALPDTQRDEIAEKILRKGHVVAVTGDGTNDAPALHEADVGLAMGIQGTEVAKESSDIIILDDDFASVVKVVKWGRSVYANIQKIIQFQLTINVTALFTNVVAAVFSGEVLLNTVQFLWVILIMDTLGALALATEPPTEQLMDSPPVGRRERLIKKIKWKSLLVQAVSQAFSLLLLHFRGISLLSLKPDIKGHAIKNTIIFNTFVFFQLSNLFNAGKPDQHNIFKGITRNYFFMGIVIITLLFQIIIIEFLGKFTKTVRLNWKQWMVSIILGSSGSIILSALDVVETSLSCLLGSHFPVTFVAVRSDILACQSPKSRVMTRCTRLSTVGVYTETMFGTFTIGTFPLDDDGNASGGVVLVTLTNPFRVLRKSSIS 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1406 1126 Gene3D - 194 1024 - -
Sto12g1406 1126 PANTHER CATION TRANSPORTING ATPASE 113 1025 - -
Sto12g1406 1126 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 687 859 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Sto12g1406 1126 Pfam Cation transporter/ATPase, N-terminus 145 210 IPR004014 -
Sto12g1406 1126 PRINTS H+-transporting ATPase (proton pump) signature 641 659 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Sto12g1406 1126 PRINTS H+-transporting ATPase (proton pump) signature 777 793 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Sto12g1406 1126 PRINTS H+-transporting ATPase (proton pump) signature 809 834 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Sto12g1406 1126 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 136 1032 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Sto12g1406 1126 Pfam haloacid dehalogenase-like hydrolase 485 791 - -
Sto12g1406 1126 ProSitePatterns E1-E2 ATPases phosphorylation site. 490 496 IPR018303 -
Sto12g1406 1126 Gene3D - 485 822 IPR023214 -
Sto12g1406 1126 SUPERFAMILY Calcium ATPase, transduction domain A 271 362 IPR008250 -
Sto12g1406 1126 PANTHER CALCIUM-TRANSPORTING ATPASE 113 1025 - -
Sto12g1406 1126 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 495 693 IPR023299 GO:0000166
Sto12g1406 1126 SUPERFAMILY HAD-like 486 882 IPR036412 -
Sto12g1406 1126 Gene3D - 168 367 - -
Sto12g1406 1126 Pfam Cation transporting ATPase, C-terminus 863 1026 IPR006068 -
Sto12g1406 1126 Gene3D - 498 696 IPR023299 GO:0000166
Sto12g1406 1126 SMART Cation_ATPase_N_a_2 142 216 IPR004014 -
Sto12g1406 1126 PRINTS P-type cation-transporting ATPase superfamily signature 315 329 - -
Sto12g1406 1126 PRINTS P-type cation-transporting ATPase superfamily signature 488 502 - -
Sto12g1406 1126 PRINTS P-type cation-transporting ATPase superfamily signature 689 700 - -
Sto12g1406 1126 PRINTS P-type cation-transporting ATPase superfamily signature 711 721 - -
Sto12g1406 1126 PRINTS P-type cation-transporting ATPase superfamily signature 777 796 - -
Sto12g1406 1126 PRINTS P-type cation-transporting ATPase superfamily signature 801 813 - -
Sto12g1406 1126 Pfam E1-E2 ATPase 268 466 - -
Sto12g1406 1126 SUPERFAMILY Calcium ATPase, transmembrane domain M 144 1029 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1406 Sto-Chr12 9526010 9548802 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1406 116 1024 Primary Pumps ATPases AT5G57110 66.916 0.0 1245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1406 K01537 - gmx:100792945 1294.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1406 12 9526010 9548802 Sto12g1406 12 9526010 9548802 ECH