Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1404 ATGGCTGTGGTTGAGGCTTACGTTGGTGGGAAGAAGATTGATCCTCCTCACAACAAATTGAAGCTCTCAGCTCTGCTCTGCACTTTGCTTGTTGAAGGTGTTGCACAGAACACCAATGGCAGTGTTTATGTCCCTGAGAGTGGTGACAATGTTGAGGTCTATGGATCACCTACGGAAAAGGCAATTTTAAATTGGGGAATTCAGCTAGGGATGAATTTCAAGGCTATTAGATCAGAGTCATCAATTATACACATGTTTCCATTCAATTCAGAAAAAAAACGCAGCGGAGTTGCAGTGCAGATGCCTGACTCTCAAGTTCATATACATTGGAAAGGGGCTGCTGAGATAATACTAGCCTGTTGTACATCATATATGGATGCAAATGACCAGTTAGTAGAGATGGATGAAGAGAAGATAAGTAGTTTTAAACAAGCTATTGAAGACATGGCTGCTAGTAGTCTGCGTTGTGTTGCCATTGCATATAGATTATATGAGAAGGAAAATGTTCCAACTAGTGAAGAAGAACTTGCTCACTGGTTTTTACCAGATGGTAATCTTGTTTTATTGGCTATTGTTGGTCTCAAGGATCCTTGTCGACCTGGTGTCAAGGATGCAGTGCAAATTTGCCAAAAAGCTGGAGTGATGGTGCAAATCGTAACTGGTGACAATGTGCATACTGCAAAAGCAATTGCTCTGGAATGCGGAATACTTAATTCACTAGATGCCGCTGAGCCAATCGTCATCGAAGGAAAAGTATTTCGTGCATTGCCTGATACGCAGAGGGATGAGATTGCCGAAAAGATATTGGTTATGGGACGGTCTTCTCCTATTGACAAGCTTTTACTTGTGCAATCACTGAAGAGGAAGGGGCATGTTGTGGCTGTAACTGGGGATGGAACTAATGATGCTCCTGCACTTCATGAGGCTGATGTAGGACTTGCAATGGGTATTCAAGGGACTGAAGTTGCTAAAGAGAGCTCTGATATCATTATTTTGGATGACGATTTTGCTTCAGTTGTAAAGGTTGTGAAATGGGGGCGTTCTGTATATGCAAATATTCAGAAAATTATTCAGTTTCAGCTAACAATCAATGTGACGGCTCTTTTTACAAATGTTGTCGCTGCAGTTTTCTCCGGCGAGGTCCTGTTAAATACAGTGCAGTTTCTGTGGGTAATTCTGATTATGGATACACTTGGAGCACTAGCCTTAGCAACTGAACCACCAACTGAGCAACTAATGGACAGCCCTCCGGTGGGTCGAAGAGAACGCCTcataaagaaaatcaagtggaAGAGTTTGCTCGTACAGGCAGTCTCCCAAGCATTTTCTTTGCTTTTATTGCATTTTCGAGGTATAAGCTTACTCAGTCTGAAACCTGACATCAAAGGCCATGCTATCAAGAACACTATAATATTTAACACATTTGTTTTCTTTCAGctctctaatttatttaatgcTGGGAAGCCAGATCAACACAACATATTCAAAGGAATCACAAGAAACTACTTCTTTATGGGGATAGTGATTATAACTCTTTTGTTTCAGATTATCATCATTGAATTTCTGGGAAAATTCACCAAAACAGTAAGGCTTAATGGGAAGCAGTGGATGGTTTCTATCATCCTTGGGAGCAGTGGATCAATAATTCTGTCAGCATTGGATGTAGTAGGTTAG 1674 0.4044 MAVVEAYVGGKKIDPPHNKLKLSALLCTLLVEGVAQNTNGSVYVPESGDNVEVYGSPTEKAILNWGIQLGMNFKAIRSESSIIHMFPFNSEKKRSGVAVQMPDSQVHIHWKGAAEIILACCTSYMDANDQLVEMDEEKISSFKQAIEDMAASSLRCVAIAYRLYEKENVPTSEEELAHWFLPDGNLVLLAIVGLKDPCRPGVKDAVQICQKAGVMVQIVTGDNVHTAKAIALECGILNSLDAAEPIVIEGKVFRALPDTQRDEIAEKILVMGRSSPIDKLLLVQSLKRKGHVVAVTGDGTNDAPALHEADVGLAMGIQGTEVAKESSDIIILDDDFASVVKVVKWGRSVYANIQKIIQFQLTINVTALFTNVVAAVFSGEVLLNTVQFLWVILIMDTLGALALATEPPTEQLMDSPPVGRRERLIKKIKWKSLLVQAVSQAFSLLLLHFRGISLLSLKPDIKGHAIKNTIIFNTFVFFQLSNLFNAGKPDQHNIFKGITRNYFFMGIVIITLLFQIIIIEFLGKFTKTVRLNGKQWMVSIILGSSGSIILSALDVVG 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1404 557 Pfam Cation transport ATPase (P-type) 45 123 - -
Sto12g1404 557 Pfam Cation transporting ATPase, C-terminus 382 545 IPR006068 -
Sto12g1404 557 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 1 202 IPR023299 GO:0000166
Sto12g1404 557 Gene3D - 342 543 - -
Sto12g1404 557 PANTHER CALCIUM-TRANSPORTING ATPASE 1 544 - -
Sto12g1404 557 SUPERFAMILY HAD-like 140 401 IPR036412 -
Sto12g1404 557 PRINTS P-type cation-transporting ATPase superfamily signature 190 201 - -
Sto12g1404 557 PRINTS P-type cation-transporting ATPase superfamily signature 212 222 - -
Sto12g1404 557 PRINTS P-type cation-transporting ATPase superfamily signature 296 315 - -
Sto12g1404 557 PRINTS P-type cation-transporting ATPase superfamily signature 320 332 - -
Sto12g1404 557 PRINTS H+-transporting ATPase (proton pump) signature 142 160 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Sto12g1404 557 PRINTS H+-transporting ATPase (proton pump) signature 296 312 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Sto12g1404 557 PRINTS H+-transporting ATPase (proton pump) signature 328 353 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Sto12g1404 557 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 28 551 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Sto12g1404 557 PANTHER CATION TRANSPORTING ATPASE 1 544 - -
Sto12g1404 557 Gene3D - 198 341 IPR023214 -
Sto12g1404 557 SUPERFAMILY Calcium ATPase, transmembrane domain M 145 546 IPR023298 -
Sto12g1404 557 Pfam haloacid dehalogenase-like hydrolase 135 310 - -
Sto12g1404 557 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 263 378 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Sto12g1404 557 Gene3D - 38 197 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1404 Sto-Chr12 9506349 9512552 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1404 1 543 Primary Pumps ATPases AT5G57110 65.385 0.0 742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1404 12 9506349 9512552 Sto12g1404 12 9506349 9512552 ECH