Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1399 ATGAGTTTCGTGGTTGGCCGCAGCGGCCGCCGGCAAGATATCGAGGCCGGGAATAATGGCTCCGACGACGAGGCTTCGGGATATTCTTCAGATCCATTTCTTATCCCGAGAACCAAGGGTGCTTCTACTGAAGCACTCAGGCGATGGAGGCAAGCTGCGCTTGTGGTTAATGCTTCTCGGCAATTCCGTTACACATCGAAGCAGCAAACATTGAGGAATACTACGCCTCATGAGGAAGCCACTATTAGAGAGCTTGCTTCACTTCCATATGGTAATGCAAATGAAGTCCTGGAAAAATATGGAGGGGTCACAGGGCTGGAATCTTTCCTGAAAACCAATCTAGAGAAGGGGATTAAAGGTGAAGATGATGAATTAACCAAACGAAGGAAGGCCTTTGGTTCAAACAAATATcctagaaagaaaggaagtggTTTTTGGACTTTTGTGTGGGATGCTTGCAAGGATGTGACCTTGATTATGTTGACATTAGCGGCAGTCGCTTCTTTGGCACTGGGAATAACATCTGAGggTATCAAGGAAGGATGGTATGATGGAGGAAGCATTGTTTTTGCAATTATTCTTGTTATCATGGTTATAGCTGTAAGTGATTATAAGCAGTCTCTCAGGTTTCTAGAACTAAATGAGGAAAAGAGAGACATACATATAGAGGTTATTAGAAATGGAAGAAGAGTTCAGATCTCAATATATGATCTTGTTGTTGGTGATGTTGTACCCCTTAATATTGGTAATCAGGTCCCTGCTGATGGAGTTTTCATCACTGGTCACTCTCTTGCAATTGATGAATCTAGCATGATTGGGGAGAACAAGATTGTTCATAAGGACTCAAAGCACCCATTTCTGATGTCTGGATGTAAAGTTGCAGATGGCAGTGGCACTATGCTGGTTACAGCAGTTGGTATGAATACTGAGTGGGGGAATGTAATGTCTAAAATGTCAGAAGACACTACTGAAGAAACACCCTTACAGGTACGTTTAAATGGTGTTGCCACCAAGATTGGTGCTGTTGGCCTCCTTGTGGCTTTTGCTGTGCTTGTTGTACTAGTGATCAGATTTTTTTCTGGGGAAACTAGAATCCTGGATGGAAGTGTTGATGCTGTTCGTGAAGTAATTAAGATACTTACACTTCCGGTAATCATTGCAGTGGTTGCAGTACCTGAAGGGCTTCCTTTAGCAGTTACCTTAACacttgCCTACTCCATGAGAAAAATGATGGCGGATAAAGCTTTGGTGAGGAGGCTTTCAGCTTGTGAGACAATGGGTTCTGCCACAATCATTTGTTGTGATAAGACTGGAACCCTCACTTTGAATCAGATGAGTGTGGCTGACGCATACATTGGTAGGAAGAAGATGGATCCTCCTCACAACAAATCAGAGCTCTCTCCTCAGCTCTGCTCTTTGCTTCTTGAAGGTGTTGCATACAACACCAATGGCAGTGTTTATGTACCTCAGGGTGATGATACTGATGGTGACAATGTTGAGGTGTCTGGATCACCTACAGATAAGGCAATATTGCATTGGGGAATAAAGATGGGGATGGATTTCCATGCTATTAGATCAGAACCATCAATTATGCATGTTTTTCCATTCAATTCTGAGAAGAAACGAGGGGGAGTTGCAGATGACTCTAAAGTTCATGTACATTGGAAAGGTGCTGCTGAGATAGTACTAGGCTCTTGTACATCATATATGGATGCAAATGGCCAATTAGTAGAGATGGATCAAGAGAAGATggaattttttgaaaaagcCATTGAAGACATGGCTGGTGATAGTCTGCGTTGTGTTGCCATTGCATATAAAGATCCTTGTCGACCCGGTGTCAAGGAAGCAGTGCAACTTTGCCTAAATTCTGGAGTGAAgGTGCAAATGGTGACCGGTGACAATTTGCTTACTGCTAAAGCAATTGCTAGGGAATGTGGAATACTCGATCTGAACGAAGACGCCGCCGAGCCGAACGTTGTCGAAGGACATGAATTTCGAGCATTGTCTGATACGAGGAGAGATGAGATTGTGGAAAAAATATCAGTTATGGGACGATCTTCTCCTAATGACAAGCTTTTGCTTGTGCAAGCATTGAGGAGGAAGGGACATGTTGTGGCTGTAACTGGTGATGGAACTAATGATGCTCCTGCACTTCATGagGCTGATATAGGTCTGGCAATGGGTATTCAAGGCTCAGAAGTTGCTAAAGAAAGCTCTGATATCATTATTATGGACGACAATTTTGCTACAGTTGTGAAGGTTATGAGATGGGGTCGTTCTGTATATGCAAATACTCAAAAATTTATGCAGTTTCAGCTAACTGTCAATGTGGTGGCTATCACCATTGAAGCTTTTTCTGCATGCTTCGATGGTCTTCTCCCATTAAATGCAGTACAGCTTCTGTGGATAAATCTGATTATGGATACACTTGGAGCACTAGCCTTGGCTACTGAACCACCACTTGATGACCTAATGAACCGCCCTCCAGTGCCTCCAAGAGAACCTCTCATAACAGATATCATGTGGAGGAATATGGTCATACAGATAGCGATTCAAgtgtttgctttgtctgtaCTCAATTTCCATGGTATATCCATACTCCTTCTGCAATCTAATGTCATAGAACATGCTATTGAAGTGAAGAACACTGCAATATTTAACTCATTTGTTTTCTTTCAGATATCTACTTTAGTGAAGGCTCGAAACATGAATGAATTCAACATATTCAAGGGAATCACAAGAAACTACCTCTTATTGGGGATAGTTGGATCTATCATTTTCTTTCAGtttatcATAATTGAATTTCTGGGGAAATTCACCAAAACGGTGAGTCTTAATGGGTATCAGTGGTTCATTTCTGTACTTTTTGGAATGTCTGGGAAAACAGTTCTCACAGCAaaggatttatttttttcaattttgccCTCTGCTTGA 2937 0.4093 MSFVVGRSGRRQDIEAGNNGSDDEASGYSSDPFLIPRTKGASTEALRRWRQAALVVNASRQFRYTSKQQTLRNTTPHEEATIRELASLPYGNANEVLEKYGGVTGLESFLKTNLEKGIKGEDDELTKRRKAFGSNKYPRKKGSGFWTFVWDACKDVTLIMLTLAAVASLALGITSEGIKEGWYDGGSIVFAIILVIMVIAVSDYKQSLRFLELNEEKRDIHIEVIRNGRRVQISIYDLVVGDVVPLNIGNQVPADGVFITGHSLAIDESSMIGENKIVHKDSKHPFLMSGCKVADGSGTMLVTAVGMNTEWGNVMSKMSEDTTEETPLQVRLNGVATKIGAVGLLVAFAVLVVLVIRFFSGETRILDGSVDAVREVIKILTLPVIIAVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATIICCDKTGTLTLNQMSVADAYIGRKKMDPPHNKSELSPQLCSLLLEGVAYNTNGSVYVPQGDDTDGDNVEVSGSPTDKAILHWGIKMGMDFHAIRSEPSIMHVFPFNSEKKRGGVADDSKVHVHWKGAAEIVLGSCTSYMDANGQLVEMDQEKMEFFEKAIEDMAGDSLRCVAIAYKDPCRPGVKEAVQLCLNSGVKVQMVTGDNLLTAKAIARECGILDLNEDAAEPNVVEGHEFRALSDTRRDEIVEKISVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGSEVAKESSDIIIMDDNFATVVKVMRWGRSVYANTQKFMQFQLTVNVVAITIEAFSACFDGLLPLNAVQLLWINLIMDTLGALALATEPPLDDLMNRPPVPPREPLITDIMWRNMVIQIAIQVFALSVLNFHGISILLLQSNVIEHAIEVKNTAIFNSFVFFQISTLVKARNMNEFNIFKGITRNYLLLGIVGSIIFFQFIIIEFLGKFTKTVSLNGYQWFISVLFGMSGKTVLTAKDLFFSILPSA 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1399 978 PANTHER CALCIUM-TRANSPORTING ATPASE 26 66 - -
Sto12g1399 978 PANTHER CALCIUM-TRANSPORTING ATPASE 607 959 - -
Sto12g1399 978 PANTHER CALCIUM-TRANSPORTING ATPASE 84 607 - -
Sto12g1399 978 SUPERFAMILY Calcium ATPase, transduction domain A 221 316 IPR008250 -
Sto12g1399 978 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 72 610 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Sto12g1399 978 Gene3D - 721 966 - -
Sto12g1399 978 SFLD p-type atpase 415 761 IPR044492 -
Sto12g1399 978 PANTHER CATION TRANSPORTING ATPASE 607 959 - -
Sto12g1399 978 PANTHER CATION TRANSPORTING ATPASE 26 66 - -
Sto12g1399 978 PANTHER CATION TRANSPORTING ATPASE 84 607 - -
Sto12g1399 978 Gene3D - 295 457 - -
Sto12g1399 978 MobiDBLite consensus disorder prediction 1 36 - -
Sto12g1399 978 Pfam Ca2+-ATPase N terminal autoinhibitory domain 31 65 IPR024750 GO:0005516
Sto12g1399 978 Pfam Cation transporter/ATPase, N-terminus 102 168 IPR004014 -
Sto12g1399 978 Pfam E1-E2 ATPase 221 411 - -
Sto12g1399 978 SMART Cation_ATPase_N_a_2 99 173 IPR004014 -
Sto12g1399 978 SUPERFAMILY Calcium ATPase, transmembrane domain M 100 960 IPR023298 -
Sto12g1399 978 Pfam haloacid dehalogenase-like hydrolase 431 723 - -
Sto12g1399 978 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 528 648 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Sto12g1399 978 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 188 456 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Sto12g1399 978 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 676 799 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Sto12g1399 978 Pfam Cation transporting ATPase, C-terminus 794 959 IPR006068 -
Sto12g1399 978 ProSitePatterns E1-E2 ATPases phosphorylation site. 435 441 IPR018303 -
Sto12g1399 978 SUPERFAMILY HAD-like 431 814 IPR036412 -
Sto12g1399 978 Gene3D - 106 294 - -
Sto12g1399 978 PRINTS H+-transporting ATPase (proton pump) signature 587 605 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Sto12g1399 978 PRINTS H+-transporting ATPase (proton pump) signature 709 725 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Sto12g1399 978 PRINTS H+-transporting ATPase (proton pump) signature 741 766 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Sto12g1399 978 Gene3D - 495 619 IPR023299 GO:0000166
Sto12g1399 978 PRINTS P-type cation-transporting ATPase superfamily signature 267 281 - -
Sto12g1399 978 PRINTS P-type cation-transporting ATPase superfamily signature 433 447 - -
Sto12g1399 978 PRINTS P-type cation-transporting ATPase superfamily signature 624 634 - -
Sto12g1399 978 PRINTS P-type cation-transporting ATPase superfamily signature 709 728 - -
Sto12g1399 978 PRINTS P-type cation-transporting ATPase superfamily signature 733 745 - -
Sto12g1399 978 Gene3D - 41 83 - -
Sto12g1399 978 SFLD Haloacid Dehalogenase 415 761 - -
Sto12g1399 978 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 439 609 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1399 Sto-Chr12 9440889 9459319 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1399 2 959 Primary Pumps ATPases AT5G57110 59.674 0.0 1186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1399 K01537 - pvy:116109101 1208.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1399 12 9440889 9459319 Sto12g1399 12 9440889 9459319 ECH