Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1396 ATGAGTAAAGAGGATGCTAAAGGCGGAGCTGTGGTTCCCGAGTCTGTGTTGAAAAAGCAGAAGAGGAACGAGGAATGGGCTCTGGCCAAAAACAAGGAATTTGAAGCTGCAAAGAAAAAGAGATCTGAGACACGGAAACTAATTTATAACAGAGCCAAATTGTATGCGAAGGAATATGATGAGCAGGTATGTGAAGTTGCGTATGAGGGGTGCATTAACATTACAGAAGTGTTGGAACTTAATCTGAGTTTTAGTTGTTCATTTTTGGCTGCTCACATGGTGACTTTGTTGAAAATGTCTGTTCAGCAAAAGGAGCTGATTAGATTGAAGCGTGAAGCAAAGCTTAAGGGTGGGTTTTATGTTGACCCAGAGGCCAAGCTGTTGTTCATCGTCAGGATCCGTGGTATCAACGCTATGCACCCCAAAACAAGGAAGATTTTGCAGCTTCTTAGGCTGAGACAGATATTTAATGGTGTCTTTCTCAAAGTCAACAAGGCAACTGTGAATATGTTGCACAGGGTTGAGCCCTATGTTACATACGGGTACCCTAACCTAAAGAGTGTTAAGGAACTGATCTACAAGAGGGGTTTCGGGAAAGTTAACAAGCAGAGAATTCCTCTAACTGACAACTCTATTATCGAACAGACTTTGGGTCAGCATGGGATTATTTGTGTTGAAGATCTGATCCATGAGATCATGACCGTTGGACCTCACTTCAGGGAGGCAAATAACTTCTTGTGGCCCTTCAAGTTGAAGGCTCCTCTTGGtggtttgaagaagaaaagaaatcatTATGTTGAAGGAGGTGATGCTGGCAACCGTGAAGATTATATTAATGAGCTTATCAGAAGGATGAACTag 861 0.4135 MSKEDAKGGAVVPESVLKKQKRNEEWALAKNKEFEAAKKKRSETRKLIYNRAKLYAKEYDEQVCEVAYEGCINITEVLELNLSFSCSFLAAHMVTLLKMSVQQKELIRLKREAKLKGGFYVDPEAKLLFIVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKVNKQRIPLTDNSIIEQTLGQHGIICVEDLIHEIMTVGPHFREANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELIRRMN 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1396 286 TIGRFAM uL30_euk: 60S ribosomal protein uL30 101 286 IPR005998 GO:0000463|GO:0003735|GO:0022625
Sto12g1396 286 Pfam Ribosomal L30 N-terminal domain 12 62 IPR012988 -
Sto12g1396 286 CDD Ribosomal_L7_archeal_euk 127 286 IPR035808 -
Sto12g1396 286 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 100 286 - -
Sto12g1396 286 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 4 65 - -
Sto12g1396 286 SUPERFAMILY Ribosomal protein L30p/L7e 127 286 IPR036919 -
Sto12g1396 286 Pfam Ribosomal protein L30p/L7e 128 178 IPR016082 -
Sto12g1396 286 ProSitePatterns Ribosomal protein L30 signature. 146 178 IPR018038 -
Sto12g1396 286 PANTHER 60S RIBOSOMAL PROTEIN L7 100 286 IPR039699 -
Sto12g1396 286 PANTHER 60S RIBOSOMAL PROTEIN L7 4 65 IPR039699 -
Sto12g1396 286 Gene3D - 233 286 IPR036919 -
Sto12g1396 286 Gene3D - 127 232 IPR036919 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1396 Sto-Chr12 9394941 9397174 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1396 5 286 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 70.922 2.96e-144 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1396 K02937 - jre:109006184 415.616