Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1395 ATGAGTAAAGAGGATGCTAAAGGCGGAGCTGTGGTTCCTGAGTCCGTGTTGAAAAAGCAGAAGAGGAACGAGGAATGGGCTCTGGCCAAAAACAAGGAATTTGAAGCTGCAAAGAAAAAGAGATCTGAAACACGAAAACTAATTTATAACAGAGCCAAATTGTATgcaaaggaatatgatgagcaGCAAAAGGAGCTGATTAGGTTGAAGCGTGAAGCAAAGCTTAAGGGTGGGTTTTATGTCGACCCCGAAGCCAAGCTGTTGTTCATCGTCAGGATCCGTGGTATCAATGCTATGCACCCCAAAACACGGAAGATTTTGCAGCTTCTTAGACTGAGACAGATATTTAATGGTGTCTTTCTCAAAGTTAACAAGGCAACTGTGAATATGCTGCACAGGGTTGAACCTTATGTTACATACGGGTACCCTAACCTAAAGAGCGTTAAGGAACTGATCTACAAGAGGGGGTTCGGCAAAGTTAACAAGCAGAGAATTCCTCTGACCGACAACTCTATTATCGAACAGACTTTGGGTCAGCATGGGATTATTTGTGTGGAAGATCTGATCCACGAGATTATGACCGTTGGACCTCACTTCAGGGAGGCTAATAACTTCCTGTGGCCTTTCAAGTTGAAGGCTCCTCTTGGtggtttgaagaagaaaagaaatcatTATGTTGAAGGAGGAGATGCTGGCAACCGTGAAGATTATATTAATGAGCTTATCAGAAGGATGAATTAG 741 0.4089 MSKEDAKGGAVVPESVLKKQKRNEEWALAKNKEFEAAKKKRSETRKLIYNRAKLYAKEYDEQQKELIRLKREAKLKGGFYVDPEAKLLFIVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKVNKQRIPLTDNSIIEQTLGQHGIICVEDLIHEIMTVGPHFREANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELIRRMN 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1395 246 Pfam Ribosomal L30 N-terminal domain 12 83 IPR012988 -
Sto12g1395 246 ProSitePatterns Ribosomal protein L30 signature. 106 138 IPR018038 -
Sto12g1395 246 SUPERFAMILY Ribosomal protein L30p/L7e 87 246 IPR036919 -
Sto12g1395 246 CDD Ribosomal_L7_archeal_euk 87 246 IPR035808 -
Sto12g1395 246 Pfam Ribosomal protein L30p/L7e 88 138 IPR016082 -
Sto12g1395 246 PANTHER 60S RIBOSOMAL PROTEIN L7 4 246 IPR039699 -
Sto12g1395 246 TIGRFAM uL30_euk: 60S ribosomal protein uL30 13 246 IPR005998 GO:0000463|GO:0003735|GO:0022625
Sto12g1395 246 Coils Coil 52 76 - -
Sto12g1395 246 Gene3D - 193 246 IPR036919 -
Sto12g1395 246 Gene3D - 87 192 IPR036919 -
Sto12g1395 246 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 4 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1395 Sto-Chr12 9390313 9392711 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1395 5 246 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 82.645 6.72e-152 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1395 K02937 - jre:109006184 435.261