Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1386 ATGGATAACATCTACTGGGAAACTAACATGTTCCTCCAAACAGAAGAGCTCGATAGTTGGGGATTGGACGAGGCCATCTCCGGCTACTACGATTCCAGCTCTCCCGACGGCGCCGCCTCCTCCGCCGCCTCCAAGAACATTGTCTCCGAGAGAAATCGCCGGAAGAAGCTCAACGAACGGCTCTTCGCACTCCGAGCCGTGGTCCCCAACATTAGCAAGATGGATAAGGCATCGATAATAAAGGACGCGATAGAGTATATACAGAGCTTGCACGAGGAAGAGAAGAGCGTTGAGGCAGAGATAATGGAGCTTGAATCTGGGAAGAAGAATAGTAATAGTAACAATGGAAGGTATGATGTGTATGAACAGGAGGATCTGCCTCTGCTTCTCagatccaagaagaagaaaacagagCAGCGGCAGTTATTTGATTCTGTGACCTCGAGAAATTCCCCAATTCAAGTTCATGAGCTAAGAGTTACATACATGGGAGAAAAGACAATAGTGGTGAGCTTGACATGTGGCAAGAGGACAGACACAATGATCAAACTTTGTGAAGTTTTTGAATCTTTGAAGCTAAGGATTATTACAGCCAACATCACTTGCTTTTCAGGCAGCCTCTTGAAGACTGTCTTCATTGaggCAGATGAAGAGGAGAAAGATATTGTACAGATAAAAATCCAAACAGCCATTGCAGCTCTTAATGATCCTTCAAGTCCTATGAGCATCTGA 732 0.4385 MDNIYWETNMFLQTEELDSWGLDEAISGYYDSSSPDGAASSAASKNIVSERNRRKKLNERLFALRAVVPNISKMDKASIIKDAIEYIQSLHEEEKSVEAEIMELESGKKNSNSNNGRYDVYEQEDLPLLLRSKKKKTEQRQLFDSVTSRNSPIQVHELRVTYMGEKTIVVSLTCGKRTDTMIKLCEVFESLKLRIITANITCFSGSLLKTVFIEADEEEKDIVQIKIQTAIAALNDPSSPMSI 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1386 243 Gene3D - 38 107 IPR036638 GO:0046983
Sto12g1386 243 Coils Coil 87 107 - -
Sto12g1386 243 SMART finulus 47 96 IPR011598 GO:0046983
Sto12g1386 243 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 237 - -
Sto12g1386 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 42 105 IPR036638 GO:0046983
Sto12g1386 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 41 90 IPR011598 GO:0046983
Sto12g1386 243 PANTHER TRANSCRIPTION FACTOR BHLH35 2 237 - -
Sto12g1386 243 Pfam Helix-loop-helix DNA-binding domain 48 90 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1386 Sto-Chr12 9274955 9283190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1386 5 214 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 65.094 2.16e-86 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto12g1386 HLH 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1386 - - gmx:100817978 358.992