Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1381 ATGCGGGATAGTCAAAAGAATCTAAATAACAGGGGATCAAGAAAGTCCAGTCATTCAAAGGCACTAACCGGTTTAAAGCCATGCTCATCATTGAAGTTCAAAACTAGTAGCCCAATATCCCAAGGAAAGAGGCataaattgaaatcaaaatctaATGCACGCAGAGTTGGTGCAAGCATATCAAGAACGATAACTGACTCTTCTAACAAGGACTctccaaaaaagaaattgatcaTTAGACAAAGATTTCATAAAACCAATGGAAAATCATCACAAAAGCTCACATCATCAAAGCTACAAGGTGAACAAAATTCTCATAGTTCTGGGGATGAGGCGAAAGAATTAGATGAGGAGAGGAGAATCAGgtatcttttaattaaaatgaagctGGAGCAGAACCTAATTGATGCTTACTCTGCAGAAGGTTGGAAAGGTCAGAGTCGAGAAAAGATTAGGCCAGAAAAAGAGCTGCTAAGAGCTCAGAAGAAGATTTTACAATGTAAGCTTAGTATCCGAGAGACAATTCACCAGTTGGATTCTCTTAGTTCGGTGGGTAGCATTGAAGGTTCTGTCATTGCTCCAGATGGATCTGTTTACCATGAACATATATTCTGTGCAAAGTGCAAATTGCGTGAAGCTTTCCAAGATAATGATATTATACTATGTGATGGCACTTGCAATCGTGCTTTTCACCAAAAATGTCTTGATCCTCCGTTGGAAACAGAAAATATTCCTCCCGGAGACCAGGGCTGGTTTTGCAAGTTCTGTGAATGTAAGATGGAAATACTAGAGGTAATAAATGCTCATCTTGGGACTCATTTCTCCTTGGACAGCACTTGGCAGGACGTATTTAAGGAAGAAGCTTCCATACCAGACAGTGATACTAGATTATTGAATCAAGAAGAAGAATGGCCATCGGATGATTCTGATGATGATGACTATAATCCAGAGGGCAGAGAAGATAGCCACAATATTGGCACAGAAGGAATTGATGATAATGCATCTGATGGTCTAAGCAGTTCTTCCAGTCTATGGGCTTCAGATGTTGAATGTTCTCCAGGAAAGGAAGGTGTTGAACATGAATTTGTATCTGTAAATAGTTGCCAAGATTCTGATGGATCTGGGGAGATAGCATGTGGCCGGAGGCGGCGAAAAGCAGTTGACTACCAGAAACTTTATTATGAAATGTTTGGGAAAGATGCTCCTTCATTTGAACAAGTTAGCGAAGATGAAGACTGGGGTCCTggcaaaagaaagagaagagagaaggaaTCTGAAGCTGTTAATACATTGATGACTCTCCATGAAAGTGACAATAAATATCCCAATGATGAGCAGAACAATGCTAGGGAAGTATCTCCAGGCATCCAAATTAGAAGACCTTGTTTTAGGCTTCCACGTTATGCAGTTGAGAAGCTTCGCCAAGCCTTTGCAGATAATGAACTCCCGTCAAAATCTGTGAAAGATGATCTTTCGAAAGAGTTGGGACTGGATGCTGATAAGGTTAGCAAATGGTTCAAAAATGCACGCTACTTAGCACTTAAAACCAGGAAGCAGCAAGCAGAAGGTGCAGAACAGCTTCCAAGCATTCCTTCAGGATCTCCAAAGGATTCTAGTGTACAAAATTTGGAGAAAGAGCATTTGACATCAAAGGAAACTTCAAAAGTAACTGTGACTCGTCCGGAGAAGAATGCTAAAAACGTCATCCATAGAAAGCGAATTAGGTCATCTAGCCATAATTCTTTGAAGAATAGGAAACAAGAAATATCTCCACCTCATTCAAGAGAAAATGTCAACAAGGATCTTGTGGAGTTCGCAGATGATGTGTGCTTGAAGAAActgttgaaagaaaaaaagatgagGAAGAGGGTAAGTTATATGTTTGAAGGGGACTCTCATACAGCAGAGTTGGAATTTGAAAAACTTAGTAAAATTAAGAGTAGAATAGACAATATGAAGCAGAAATTACTTCAAATACAAAATTACAGAGCAAAGGATTCAGATAAACCCAAATCTAATGAACAATCAGTTATATATGTACCAGTAGTTGAGTTGAGAGAAAAAAGTTga 2070 0.3754 MRDSQKNLNNRGSRKSSHSKALTGLKPCSSLKFKTSSPISQGKRHKLKSKSNARRVGASISRTITDSSNKDSPKKKLIIRQRFHKTNGKSSQKLTSSKLQGEQNSHSSGDEAKELDEERRIRYLLIKMKLEQNLIDAYSAEGWKGQSREKIRPEKELLRAQKKILQCKLSIRETIHQLDSLSSVGSIEGSVIAPDGSVYHEHIFCAKCKLREAFQDNDIILCDGTCNRAFHQKCLDPPLETENIPPGDQGWFCKFCECKMEILEVINAHLGTHFSLDSTWQDVFKEEASIPDSDTRLLNQEEEWPSDDSDDDDYNPEGREDSHNIGTEGIDDNASDGLSSSSSLWASDVECSPGKEGVEHEFVSVNSCQDSDGSGEIACGRRRRKAVDYQKLYYEMFGKDAPSFEQVSEDEDWGPGKRKRREKESEAVNTLMTLHESDNKYPNDEQNNAREVSPGIQIRRPCFRLPRYAVEKLRQAFADNELPSKSVKDDLSKELGLDADKVSKWFKNARYLALKTRKQQAEGAEQLPSIPSGSPKDSSVQNLEKEHLTSKETSKVTVTRPEKNAKNVIHRKRIRSSSHNSLKNRKQEISPPHSRENVNKDLVEFADDVCLKKLLKEKKMRKRVSYMFEGDSHTAELEFEKLSKIKSRIDNMKQKLLQIQNYRAKDSDKPKSNEQSVIYVPVVELREKS 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1381 689 SUPERFAMILY FYVE/PHD zinc finger 196 262 IPR011011 -
Sto12g1381 689 Pfam Homeodomain 467 511 IPR001356 GO:0003677
Sto12g1381 689 ProSitePatterns Zinc finger PHD-type signature. 205 256 IPR019786 -
Sto12g1381 689 MobiDBLite consensus disorder prediction 404 453 - -
Sto12g1381 689 SMART HOX_1 458 520 IPR001356 GO:0003677
Sto12g1381 689 Gene3D - 458 525 - -
Sto12g1381 689 MobiDBLite consensus disorder prediction 404 429 - -
Sto12g1381 689 SUPERFAMILY Homeodomain-like 459 523 IPR009057 -
Sto12g1381 689 MobiDBLite consensus disorder prediction 566 580 - -
Sto12g1381 689 MobiDBLite consensus disorder prediction 333 348 - -
Sto12g1381 689 MobiDBLite consensus disorder prediction 10 38 - -
Sto12g1381 689 ProSiteProfiles 'Homeobox' domain profile. 456 516 IPR001356 GO:0003677
Sto12g1381 689 MobiDBLite consensus disorder prediction 88 106 - -
Sto12g1381 689 Pfam PHD-finger 204 259 IPR019787 -
Sto12g1381 689 MobiDBLite consensus disorder prediction 291 350 - -
Sto12g1381 689 PANTHER POLYCOMB PROTEIN PCL 2 667 - -
Sto12g1381 689 MobiDBLite consensus disorder prediction 518 596 - -
Sto12g1381 689 MobiDBLite consensus disorder prediction 1 114 - -
Sto12g1381 689 MobiDBLite consensus disorder prediction 522 539 - -
Sto12g1381 689 ProSiteProfiles Zinc finger PHD-type profile. 202 259 IPR019787 -
Sto12g1381 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 267 IPR013083 -
Sto12g1381 689 CDD homeodomain 459 520 IPR001356 GO:0003677
Sto12g1381 689 MobiDBLite consensus disorder prediction 540 559 - -
Sto12g1381 689 CDD PHD_PRHA_like 204 256 IPR045876 -
Sto12g1381 689 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 2 667 - -
Sto12g1381 689 SMART PHD_3 204 257 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1381 Sto-Chr12 9235192 9241314 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1381 118 521 Homeobox Transcription Factor Family AT4G29940 59.277 6.80e-154 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Sto12g1381 Homeodomain 4.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1381 - - gmx:100787118 839.721