LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto12g1356	ATGATGGTGAGCGGCGAGGAATGCACGGAGGATATGGGAATATGCGATGCCGATTGTACCCCAAGATGCCGTTCAGTTCATCCGGGAAGTCTGGGTTCTTGTGTGGGCCCTCAGATATGCAGGTGTCTATTCGACTGCCATACATGCAAAGTCAGCCTTGGGTATTTGGGTTGCAGAGACGATGACTGTAAAGCCAAGTGTATGGCTCAGCACCCTCGCCCTGATACCGTCGGATATTGTGTCACCATAGGAGAATTTAATGACTGTTTCTGTGAGTACAAGTGctgGACAAATGCATTAGCAGCTCTGATTCTTCTTTTCAGGCTATTCTTTGCATATTCCAGCAAGGTTGTGCAAGACCAAATAGTAGAAGAATATTATGTCTGTTTCCATGAGAGATTTGGATCCAGCTTTCCAGGGAGCTGGACAAAAGGCACAAATGCTTCAAAAAGTGGTGCCCTGCGTCATGATATCCATTACTGGCTTGGTAAAGACACAAGTCAGGATGAAGCTGGTGTTGCAGCCATCAAAACGGTTGAGCTGGATGCTGCTCTTGGAGGACGTGCTGTTCAGTATCGTGAATCACAGGGTCATGAAACTGAAAAGTTCTTGTCTTATTTTAGGCCATGTATAATACCTCAAGAAGGTGGAGTTGCGTCTGGTTTTAAACATGTTGAAGCTGATAAATATACAACACGGTTGTATGTACCTTTTGCACGAACAACACTAAGCCACGATGATGTTTTTATTCTAGATACTCAGTCCAAAATCTTCCAATTTAATGGTTCCAATTCATCTATTCAAGAAAGGGCCAAAGCATTGGAAGTTGtacaatatataaaagataCCTTCCATGATGGAAAATGTGATGTAGCGGTTGTTGAGGATGGAAAGTTGATGGCTGATGCTGATGCTGGAGAATTCTGGGGTTTCTTTGGAGGCTTTGCTCCTCTTCCGCGGAAAGCAGCCACTGATGATGATAAGACTGTTGATTCTCATCCTCCAAAGCTGCTGTGTGTCGTGAAGGGGCAGACAGAACCTATTGAGACTGATTCTCTTACAAGGGAACTTCTAGACACAAATAAAAGTTATATTGTTGATTGTGGGTTGGAAGTGTTTGTCTGGAATGGAAGAAACACCTCTCTTGATGAAAGAAAGAGTGCAAGTGGAGCTGCAGATGCTTTAGTCAGTGACCCTGATCGACTTAAATCCCACACAATTCGTGTGATTGAAGGATTTGAAACGGTGATGTTCAAGTCCAAGTTTGATTCCTGGCCTCAAACAGCTAATGTAACTGTGTCTGAAGATAGTCGTGGCAGGGTGGCAGCACTTCTAAAACGTCAAGGAGTGGATGTCAAGGGTCTGTTGAAAGCGGGtccagaaaaagaagaagaacctAACCTCCACATTGATTGCACAGGACATTTGCAGGTTTGGCGGGTGAATGGTCGGGAAAAGGTTCTCCTTCAAGCTTCTGATCAGTCAAAATTTTACAGTGGAGATTGCTATATCTTACTCTATTCATATCCCGGAGAAGATAGAGAGGAGCATCTTATAGTAACATGGATTGGAAAGAATAGCGTTGAGGAAGAAAGAGCTTCAGCTATTTCACTGGCAAGCAAAATGGTTGAGTCAATGAAGTTTATTCCTTGCCTGGCTCGTGTTTATGAAGGGAATGAACCACTTCAGTTTTATTCTATCCTCCAAAGCTTTATTGTTTATAAGGGTGGACTTAGTGATGGATATAAGAAATACATTACGGAGAAAGAAATTCCAGATGACACATACAACGTGGATGGTGTTGCATTATTCCGTATCCAGGGCTCTGGACCAGAAAGTATGCAAGCTATACAAGTCGAACCAGTTGCTACCTCGTTCAATTCTTCTTATTGCTACATACTTCATAATGGGTCCACAGTCTTCACATGGCTTGGAAGCTTTACAAACTCAGACGAACAGGAACTTGTTGAGAGGATGCTGGATTTGATAAAGCCTGAATTACAAACCAAACCACAAAAAGAAGGTTATGAATCTGAACAATTTTGGGATTTGTTAGGAGGAAAATTGGAATATCCCACTCAAAAGATTGTAAGGGATACTGAAGGTGATCCTCGCCTATTTTCTTGCAACTCATCAAAAGCTAACCTATGCATTAAAGAACCAGATAGAGAAAATAGTATGTTAGGTCAGGTTGATCTCTGCAAGGTGACAGAAATATACAACTTTTCCCAGGATGATTTAATGACAGAAGACATTTTCATCCTGGATTGTCATTCAGAAATCTTTGTCTGGGTTGGCCAACAGATTGAACCCAAGAGTATAATGCAAGCTCTAACAATTGGTGAGAAATTTCTTGAGCATgatttttttctagaaaaattaTCTCGTGAAGCTCCAATATATCTTGTCATGGAAGGTAGTGAACCACCTTTCTTCACTCGCTTCTTCAAGTGGGAATCCGCAAAATCTGTAAAACCCAAAAGGAGAGCACAAGTATCCTATGGAGGAAGGTCTGGTAGCGCGCCAGAAAAACCCCAGCGTTCCCGCAGTGTGTCTTTAGTTCCTGAACGTGCTCGTGTGAGGGGCAGGTCTCCAGCCTTTAATGCGCTAGCAGCTACATTTGAGGGCCCCAAAGATAGAAACCTTTCAACTCCACCCCCTATGATTAGAAAGCTGTATCCAAAATCTTTGACGCCCGATTCAGCAAAATTGGCACCCAAATCTGCAGCTATAGCTGCACTTAGTTCTAGTTTTGAATCACGTCGAGACAACTTTATACCTCGATCAGTCAAAGCGAGTCCAGAGATCCCAAGATCGAAATCCGATACAAGCAATGGTGGGGAATCTATGAGCAGTATAGAGGAAGGTGTGAAAGAGGGTGAAACTGAAGATGATGAAAATCTCCCAGTTTATCCATATGAACGCCTTAAAATAGGATCTGCAGATCCTATAGCAGACATTGATGTGACCAAGCGAGAGGCTTATTTGTCGGCAGCAGAGTTTAAAGAGAAATTTGGGATGACAAAGAGTGAATTATACCAGATGCCGAAATGGAAACAAAACAAACTCAAAATGGCCATTCATTTATTCTGA	3093	0.419	MMVSGEECTEDMGICDADCTPRCRSVHPGSLGSCVGPQICRCLFDCHTCKVSLGYLGCRDDDCKAKCMAQHPRPDTVGYCVTIGEFNDCFCEYKCWTNALAALILLFRLFFAYSSKVVQDQIVEEYYVCFHERFGSSFPGSWTKGTNASKSGALRHDIHYWLGKDTSQDEAGVAAIKTVELDAALGGRAVQYRESQGHETEKFLSYFRPCIIPQEGGVASGFKHVEADKYTTRLYVPFARTTLSHDDVFILDTQSKIFQFNGSNSSIQERAKALEVVQYIKDTFHDGKCDVAVVEDGKLMADADAGEFWGFFGGFAPLPRKAATDDDKTVDSHPPKLLCVVKGQTEPIETDSLTRELLDTNKSYIVDCGLEVFVWNGRNTSLDERKSASGAADALVSDPDRLKSHTIRVIEGFETVMFKSKFDSWPQTANVTVSEDSRGRVAALLKRQGVDVKGLLKAGPEKEEEPNLHIDCTGHLQVWRVNGREKVLLQASDQSKFYSGDCYILLYSYPGEDREEHLIVTWIGKNSVEEERASAISLASKMVESMKFIPCLARVYEGNEPLQFYSILQSFIVYKGGLSDGYKKYITEKEIPDDTYNVDGVALFRIQGSGPESMQAIQVEPVATSFNSSYCYILHNGSTVFTWLGSFTNSDEQELVERMLDLIKPELQTKPQKEGYESEQFWDLLGGKLEYPTQKIVRDTEGDPRLFSCNSSKANLCIKEPDRENSMLGQVDLCKVTEIYNFSQDDLMTEDIFILDCHSEIFVWVGQQIEPKSIMQALTIGEKFLEHDFFLEKLSREAPIYLVMEGSEPPFFTRFFKWESAKSVKPKRRAQVSYGGRSGSAPEKPQRSRSVSLVPERARVRGRSPAFNALAATFEGPKDRNLSTPPPMIRKLYPKSLTPDSAKLAPKSAAIAALSSSFESRRDNFIPRSVKASPEIPRSKSDTSNGGESMSSIEEGVKEGETEDDENLPVYPYERLKIGSADPIADIDVTKREAYLSAAEFKEKFGMTKSELYQMPKWKQNKLKMAIHLF	1030

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto12g1356	1030	Gene3D	Villin headpiece domain	952	1030	IPR036886	GO:0003779\|GO:0007010
	Sto12g1356	1030	SUPERFAMILY	Actin depolymerizing proteins	225	321	-	-
	Sto12g1356	1030	MobiDBLite	consensus disorder prediction	936	951	-	-
	Sto12g1356	1030	PRINTS	Gelsolin family signature	404	425	IPR007122	GO:0051015
	Sto12g1356	1030	PRINTS	Gelsolin family signature	493	509	IPR007122	GO:0051015
	Sto12g1356	1030	PRINTS	Gelsolin family signature	518	536	IPR007122	GO:0051015
	Sto12g1356	1030	PRINTS	Gelsolin family signature	551	571	IPR007122	GO:0051015
	Sto12g1356	1030	PRINTS	Gelsolin family signature	614	634	IPR007122	GO:0051015
	Sto12g1356	1030	PRINTS	Gelsolin family signature	674	693	IPR007122	GO:0051015
	Sto12g1356	1030	SMART	VILL_6	724	819	IPR007122	GO:0051015

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto12g1356	Sto-Chr12	8993420	9009372	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto12g1356	8	95	Plant Defensins Gene Families	AT5G38330	31.959	1.59e-10	58.2

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto12g1356	-		-	gmx:100809968	1325.07

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto12g1356	12	8993420	9009372	Sto3g1105	3	7792530	7803061	CCT
	Sto12g1356	12	8993420	9009372	Sto12g1356	12	8993420	9009372	ECH

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