Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1356 ATGATGGTGAGCGGCGAGGAATGCACGGAGGATATGGGAATATGCGATGCCGATTGTACCCCAAGATGCCGTTCAGTTCATCCGGGAAGTCTGGGTTCTTGTGTGGGCCCTCAGATATGCAGGTGTCTATTCGACTGCCATACATGCAAAGTCAGCCTTGGGTATTTGGGTTGCAGAGACGATGACTGTAAAGCCAAGTGTATGGCTCAGCACCCTCGCCCTGATACCGTCGGATATTGTGTCACCATAGGAGAATTTAATGACTGTTTCTGTGAGTACAAGTGctgGACAAATGCATTAGCAGCTCTGATTCTTCTTTTCAGGCTATTCTTTGCATATTCCAGCAAGGTTGTGCAAGACCAAATAGTAGAAGAATATTATGTCTGTTTCCATGAGAGATTTGGATCCAGCTTTCCAGGGAGCTGGACAAAAGGCACAAATGCTTCAAAAAGTGGTGCCCTGCGTCATGATATCCATTACTGGCTTGGTAAAGACACAAGTCAGGATGAAGCTGGTGTTGCAGCCATCAAAACGGTTGAGCTGGATGCTGCTCTTGGAGGACGTGCTGTTCAGTATCGTGAATCACAGGGTCATGAAACTGAAAAGTTCTTGTCTTATTTTAGGCCATGTATAATACCTCAAGAAGGTGGAGTTGCGTCTGGTTTTAAACATGTTGAAGCTGATAAATATACAACACGGTTGTATGTACCTTTTGCACGAACAACACTAAGCCACGATGATGTTTTTATTCTAGATACTCAGTCCAAAATCTTCCAATTTAATGGTTCCAATTCATCTATTCAAGAAAGGGCCAAAGCATTGGAAGTTGtacaatatataaaagataCCTTCCATGATGGAAAATGTGATGTAGCGGTTGTTGAGGATGGAAAGTTGATGGCTGATGCTGATGCTGGAGAATTCTGGGGTTTCTTTGGAGGCTTTGCTCCTCTTCCGCGGAAAGCAGCCACTGATGATGATAAGACTGTTGATTCTCATCCTCCAAAGCTGCTGTGTGTCGTGAAGGGGCAGACAGAACCTATTGAGACTGATTCTCTTACAAGGGAACTTCTAGACACAAATAAAAGTTATATTGTTGATTGTGGGTTGGAAGTGTTTGTCTGGAATGGAAGAAACACCTCTCTTGATGAAAGAAAGAGTGCAAGTGGAGCTGCAGATGCTTTAGTCAGTGACCCTGATCGACTTAAATCCCACACAATTCGTGTGATTGAAGGATTTGAAACGGTGATGTTCAAGTCCAAGTTTGATTCCTGGCCTCAAACAGCTAATGTAACTGTGTCTGAAGATAGTCGTGGCAGGGTGGCAGCACTTCTAAAACGTCAAGGAGTGGATGTCAAGGGTCTGTTGAAAGCGGGtccagaaaaagaagaagaacctAACCTCCACATTGATTGCACAGGACATTTGCAGGTTTGGCGGGTGAATGGTCGGGAAAAGGTTCTCCTTCAAGCTTCTGATCAGTCAAAATTTTACAGTGGAGATTGCTATATCTTACTCTATTCATATCCCGGAGAAGATAGAGAGGAGCATCTTATAGTAACATGGATTGGAAAGAATAGCGTTGAGGAAGAAAGAGCTTCAGCTATTTCACTGGCAAGCAAAATGGTTGAGTCAATGAAGTTTATTCCTTGCCTGGCTCGTGTTTATGAAGGGAATGAACCACTTCAGTTTTATTCTATCCTCCAAAGCTTTATTGTTTATAAGGGTGGACTTAGTGATGGATATAAGAAATACATTACGGAGAAAGAAATTCCAGATGACACATACAACGTGGATGGTGTTGCATTATTCCGTATCCAGGGCTCTGGACCAGAAAGTATGCAAGCTATACAAGTCGAACCAGTTGCTACCTCGTTCAATTCTTCTTATTGCTACATACTTCATAATGGGTCCACAGTCTTCACATGGCTTGGAAGCTTTACAAACTCAGACGAACAGGAACTTGTTGAGAGGATGCTGGATTTGATAAAGCCTGAATTACAAACCAAACCACAAAAAGAAGGTTATGAATCTGAACAATTTTGGGATTTGTTAGGAGGAAAATTGGAATATCCCACTCAAAAGATTGTAAGGGATACTGAAGGTGATCCTCGCCTATTTTCTTGCAACTCATCAAAAGCTAACCTATGCATTAAAGAACCAGATAGAGAAAATAGTATGTTAGGTCAGGTTGATCTCTGCAAGGTGACAGAAATATACAACTTTTCCCAGGATGATTTAATGACAGAAGACATTTTCATCCTGGATTGTCATTCAGAAATCTTTGTCTGGGTTGGCCAACAGATTGAACCCAAGAGTATAATGCAAGCTCTAACAATTGGTGAGAAATTTCTTGAGCATgatttttttctagaaaaattaTCTCGTGAAGCTCCAATATATCTTGTCATGGAAGGTAGTGAACCACCTTTCTTCACTCGCTTCTTCAAGTGGGAATCCGCAAAATCTGTAAAACCCAAAAGGAGAGCACAAGTATCCTATGGAGGAAGGTCTGGTAGCGCGCCAGAAAAACCCCAGCGTTCCCGCAGTGTGTCTTTAGTTCCTGAACGTGCTCGTGTGAGGGGCAGGTCTCCAGCCTTTAATGCGCTAGCAGCTACATTTGAGGGCCCCAAAGATAGAAACCTTTCAACTCCACCCCCTATGATTAGAAAGCTGTATCCAAAATCTTTGACGCCCGATTCAGCAAAATTGGCACCCAAATCTGCAGCTATAGCTGCACTTAGTTCTAGTTTTGAATCACGTCGAGACAACTTTATACCTCGATCAGTCAAAGCGAGTCCAGAGATCCCAAGATCGAAATCCGATACAAGCAATGGTGGGGAATCTATGAGCAGTATAGAGGAAGGTGTGAAAGAGGGTGAAACTGAAGATGATGAAAATCTCCCAGTTTATCCATATGAACGCCTTAAAATAGGATCTGCAGATCCTATAGCAGACATTGATGTGACCAAGCGAGAGGCTTATTTGTCGGCAGCAGAGTTTAAAGAGAAATTTGGGATGACAAAGAGTGAATTATACCAGATGCCGAAATGGAAACAAAACAAACTCAAAATGGCCATTCATTTATTCTGA 3093 0.419 MMVSGEECTEDMGICDADCTPRCRSVHPGSLGSCVGPQICRCLFDCHTCKVSLGYLGCRDDDCKAKCMAQHPRPDTVGYCVTIGEFNDCFCEYKCWTNALAALILLFRLFFAYSSKVVQDQIVEEYYVCFHERFGSSFPGSWTKGTNASKSGALRHDIHYWLGKDTSQDEAGVAAIKTVELDAALGGRAVQYRESQGHETEKFLSYFRPCIIPQEGGVASGFKHVEADKYTTRLYVPFARTTLSHDDVFILDTQSKIFQFNGSNSSIQERAKALEVVQYIKDTFHDGKCDVAVVEDGKLMADADAGEFWGFFGGFAPLPRKAATDDDKTVDSHPPKLLCVVKGQTEPIETDSLTRELLDTNKSYIVDCGLEVFVWNGRNTSLDERKSASGAADALVSDPDRLKSHTIRVIEGFETVMFKSKFDSWPQTANVTVSEDSRGRVAALLKRQGVDVKGLLKAGPEKEEEPNLHIDCTGHLQVWRVNGREKVLLQASDQSKFYSGDCYILLYSYPGEDREEHLIVTWIGKNSVEEERASAISLASKMVESMKFIPCLARVYEGNEPLQFYSILQSFIVYKGGLSDGYKKYITEKEIPDDTYNVDGVALFRIQGSGPESMQAIQVEPVATSFNSSYCYILHNGSTVFTWLGSFTNSDEQELVERMLDLIKPELQTKPQKEGYESEQFWDLLGGKLEYPTQKIVRDTEGDPRLFSCNSSKANLCIKEPDRENSMLGQVDLCKVTEIYNFSQDDLMTEDIFILDCHSEIFVWVGQQIEPKSIMQALTIGEKFLEHDFFLEKLSREAPIYLVMEGSEPPFFTRFFKWESAKSVKPKRRAQVSYGGRSGSAPEKPQRSRSVSLVPERARVRGRSPAFNALAATFEGPKDRNLSTPPPMIRKLYPKSLTPDSAKLAPKSAAIAALSSSFESRRDNFIPRSVKASPEIPRSKSDTSNGGESMSSIEEGVKEGETEDDENLPVYPYERLKIGSADPIADIDVTKREAYLSAAEFKEKFGMTKSELYQMPKWKQNKLKMAIHLF 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1356 1030 Gene3D Villin headpiece domain 952 1030 IPR036886 GO:0003779|GO:0007010
Sto12g1356 1030 SUPERFAMILY Actin depolymerizing proteins 225 321 - -
Sto12g1356 1030 MobiDBLite consensus disorder prediction 936 951 - -
Sto12g1356 1030 PRINTS Gelsolin family signature 404 425 IPR007122 GO:0051015
Sto12g1356 1030 PRINTS Gelsolin family signature 493 509 IPR007122 GO:0051015
Sto12g1356 1030 PRINTS Gelsolin family signature 518 536 IPR007122 GO:0051015
Sto12g1356 1030 PRINTS Gelsolin family signature 551 571 IPR007122 GO:0051015
Sto12g1356 1030 PRINTS Gelsolin family signature 614 634 IPR007122 GO:0051015
Sto12g1356 1030 PRINTS Gelsolin family signature 674 693 IPR007122 GO:0051015
Sto12g1356 1030 SMART VILL_6 724 819 IPR007122 GO:0051015
Sto12g1356 1030 SMART VILL_6 474 571 IPR007122 GO:0051015
Sto12g1356 1030 SMART VILL_6 220 315 IPR007122 GO:0051015
Sto12g1356 1030 SMART VILL_6 601 688 IPR007122 GO:0051015
Sto12g1356 1030 SMART VILL_6 105 210 IPR007122 GO:0051015
Sto12g1356 1030 SMART VILL_6 335 425 IPR007122 GO:0051015
Sto12g1356 1030 Pfam Villin headpiece domain 995 1030 IPR003128 GO:0003779|GO:0007010
Sto12g1356 1030 Gene3D Severin 468 599 IPR029006 -
Sto12g1356 1030 Gene3D Severin 600 695 IPR029006 -
Sto12g1356 1030 SUPERFAMILY Actin depolymerizing proteins 593 696 - -
Sto12g1356 1030 ProSiteProfiles Headpiece (HP) domain profile. 965 1030 IPR003128 GO:0003779|GO:0007010
Sto12g1356 1030 SUPERFAMILY Actin depolymerizing proteins 305 431 - -
Sto12g1356 1030 Gene3D Severin 697 833 IPR029006 -
Sto12g1356 1030 CDD gelsolin_S5_like 599 688 - -
Sto12g1356 1030 SUPERFAMILY Actin depolymerizing proteins 677 817 - -
Sto12g1356 1030 MobiDBLite consensus disorder prediction 925 968 - -
Sto12g1356 1030 PANTHER VILLIN-4 143 1030 - -
Sto12g1356 1030 SUPERFAMILY Actin depolymerizing proteins 151 235 - -
Sto12g1356 1030 Pfam Gelsolin repeat 619 655 IPR007123 -
Sto12g1356 1030 Pfam Gelsolin repeat 350 392 IPR007123 -
Sto12g1356 1030 Pfam Gelsolin repeat 492 561 IPR007123 -
Sto12g1356 1030 Pfam Gelsolin repeat 157 204 IPR007123 -
Sto12g1356 1030 Pfam Gelsolin repeat 236 298 IPR007123 -
Sto12g1356 1030 Pfam Gelsolin repeat 739 812 IPR007123 -
Sto12g1356 1030 Gene3D Severin 118 225 IPR029006 -
Sto12g1356 1030 CDD gelsolin_S4_like 470 567 - -
Sto12g1356 1030 Gene3D Severin 226 328 IPR029006 -
Sto12g1356 1030 Gene3D Severin 329 438 IPR029006 -
Sto12g1356 1030 MobiDBLite consensus disorder prediction 829 852 - -
Sto12g1356 1030 SMART VHP_1 995 1030 IPR003128 GO:0003779|GO:0007010
Sto12g1356 1030 PANTHER VILLIN 143 1030 IPR007122 GO:0051015
Sto12g1356 1030 SUPERFAMILY Actin depolymerizing proteins 464 610 - -
Sto12g1356 1030 CDD gelsolin_S6_like 703 818 - -
Sto12g1356 1030 SUPERFAMILY VHP, Villin headpiece domain 958 1030 IPR036886 GO:0003779|GO:0007010
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1356 Sto-Chr12 8993420 9009372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1356 8 95 Plant Defensins Gene Families AT5G38330 31.959 1.59e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1356 - - gmx:100809968 1325.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1356 12 8993420 9009372 Sto3g1105 3 7792530 7803061 CCT
Sto12g1356 12 8993420 9009372 Sto12g1356 12 8993420 9009372 ECH