Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1351 ATGGAGTGGGACAGCAATTCGGATCTCAGCGGGGACGACGACGAAGGCTTCATGCTCAACGATGGTGGCCCTCTTCCCTTCCCCGTTGAGGATTTGCTCCATACGGCGCCGTGTGGGTTCGTCGTCACTGACGCACTCGAGCCGGACCACCCAATTATTTATGCCAATACTGTGTTCGAGATGGTCACTGGGTATCGGGCAGAGGAGGTGCTTGGTCGCAACTGCCGCTTCTTGCAGTGTCGAGGTCCATTTGCTAAGAGAAGGCATCCATTGGTGGATTCAACAGTAGTTTCAGAAATTAGGAGATGCCTCGAGGAGGGAATTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTGATGAACAGATTGCGGATGACACCTATATATGGAGATGATGAGACTATAACACATGTCATTGGAATCCAGTTCTTCGCAGAGGCAAACATTGATCTTGGTCCTGTTCCGGGTTCTACAATTAAGGAATCTGCTAAATCATCTGATAGGTTTCGTTCTTCTGTTCTTGCTTCATTACGTCCTCTTCCAGGGGGGGACCGTAATGTATCTCGTGGAGTTTGTGGGATATTACAGTTAAGTGATGAGGTACTGTCTCTCAAGATACTTGCTCGCTTAACTCCAAGAGATATTGCATCAGTTGGCTCCGTCTGCAGGCGATTGTATGAGCTAACAAGAAATGAAGACCTTTGGAGAATGGTGTGCCAAAATGCATGGGGCAGTGAGACTACACGTGTTTTAGAAACTGTGCCGGGTGCTAGGAGACTCGGTTGGGGTAGGCTGGCAAGGGAATTGACAACTCTTGAAGCAGCAGCATGGAGAAAGCTGACTGTTGGAGGTGCTGTTGAACCCTCGCGCTGCAATTTTAGTGCTTGTGCAGTAGGTAATAGAGTTGTCCTTTTCGGTGGTGAAGGTGTTAACATGCAACCCATGAACGACACCTTTGTATTAGATCTCAATTCTAGTAATCCTGAGTGGCAACATGTCCAGGTGAGCTCTCCTCCTCCTGGTCGTTGGGGTCACACACTTTCTTGTGTTAATGGTTCTCATTTGGTTGTATTTGGAGGCTGTGGAAGGCAGGGTTTGCTCAATGATGTATTTGTGCTAGACCTGGATGCAAAGCCTCCAACTTGGCGTGAAATTTCTGGATTGGCACCTCCTCTTCCAAGATCATGGCATAGCTCCTGCACTCTTgatgggactaaattgatagtTTCTGGTGGCTGTGCAGATTCTGGAGTGCTCTTAAGTGACACATTTCTCCTTGATTTGTCAATGGAGAAACCTGTTTGGAGAGAGATACCAGTGGCATGGACTCCACCTTCTCGTCTTGGCCACACACTGTCCGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCCAAGAGCGGGCCCCTACGGTTTCGCTCCAGTGATGTGTTCACGATGGATTTAAGTGAAGAGGAACCATGTTGGAGATGTGTAACCGGGAGCGGAATGCCCGGTGCTGGGAATCCAGCGGGCATAGCTCCTCCTCCTAGACTAGATCATGTGGCAGTTAGTCTTCCTGGTGGGAGAATCCTGATATTTGGTGGGTCTGTTGCAGGTCTTCACTCTGCCTCCCAGCTTTACATCCTCGACCCAACAGAAGAGAAGCCCACGTGGAGAATTCTAAACGTACCAGGCCGCCCTCCAAGATTCGCTTGGGGACATAGTACATGTGTTGTCGGAGGGACAAGAGCTATCGTACTAGGCGGTCAAACCGGAGAGGAATGGATGCTAAGCGAGCTCCATGAGCTTTCCCTGGCTAGTTCTGTAATCTAA 1836 0.4869 MEWDSNSDLSGDDDEGFMLNDGGPLPFPVEDLLHTAPCGFVVTDALEPDHPIIYANTVFEMVTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSTVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRMTPIYGDDETITHVIGIQFFAEANIDLGPVPGSTIKESAKSSDRFRSSVLASLRPLPGGDRNVSRGVCGILQLSDEVLSLKILARLTPRDIASVGSVCRRLYELTRNEDLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPAGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSVI 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1351 611 CDD PAS 36 146 IPR000014 -
Sto12g1351 611 Pfam Galactose oxidase, central domain 295 345 - -
Sto12g1351 611 Pfam F-box-like 207 245 IPR001810 GO:0005515
Sto12g1351 611 SUPERFAMILY F-box domain 190 260 IPR036047 GO:0005515
Sto12g1351 611 SUPERFAMILY Kelch motif 281 500 IPR015915 GO:0005515
Sto12g1351 611 Pfam Galactose oxidase, central domain 359 406 - -
Sto12g1351 611 ProSiteProfiles PAS repeat profile. 29 107 IPR000014 -
Sto12g1351 611 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 1 610 - -
Sto12g1351 611 PANTHER ADAGIO PROTEIN 1-LIKE 1 610 - -
Sto12g1351 611 Pfam PAS domain 37 147 IPR000014 -
Sto12g1351 611 TIGRFAM sensory_box: PAS domain S-box protein 34 146 IPR000014 -
Sto12g1351 611 Pfam Kelch motif 452 503 IPR011498 GO:0005515
Sto12g1351 611 Pfam Kelch motif 519 566 IPR011498 GO:0005515
Sto12g1351 611 Gene3D PAS domain 22 158 - -
Sto12g1351 611 SUPERFAMILY PYP-like sensor domain (PAS domain) 36 147 IPR035965 -
Sto12g1351 611 Gene3D - 274 426 IPR015915 GO:0005515
Sto12g1351 611 SUPERFAMILY Kelch motif 449 604 IPR015915 GO:0005515
Sto12g1351 611 Gene3D - 435 610 IPR015915 GO:0005515
Sto12g1351 611 Gene3D - 195 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1351 Sto-Chr12 8911450 8918018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1351 39 189 AGC Kinase Gene Family AT5G58140 29.412 8.65e-15 76.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1351 12 8911450 8918018 Sto12g1351 12 8911450 8918018 ECH