Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1348 ATGCCTTCCAAACACCCCTCTATGCCCGAATATGCCCTATTTTACAAGCGCCTCCGTTCCGCCCCCCTCCGCCGCCGTCATAAGCTCATGATTCCGCCGGGATTCGTGAAGAAATACGGCGGAGATGCGTTGCCGGAGGTGGCGATTCTCAGGCTCCCGAACGGAGCAGAGTGGGAAGTGAATCTGGAGAAAAGGAAcaacggcggcggcggcggcggcgatcGAGTGTGGTTCGCGAAGGGATGGAAGGAGTTCGCGGAGTATTACTCTGTATTCGATGGCCGATTGCTGGTATTTGGGTATAATCATTCGACTTTTCGCTTCCATGTGCTTATATTGGACTCCAAGACTTCTCTGGAAATACGATATCCTTCCGATGTAGAGAAGAATAGGGAAGAAAATTTTGAGAGAGGTTCATTATTGTGCACTGGAAGGAGAAATTGTGAGGACTCTGTATTGCCTTGTAAGAGGAGGAGAGTTATTGACGAGGGAGGTCGAAAGGTTGAGAGTGCTTTCAATTCTGTAGAGAAAGATTTGCATCATTCCACCAAGAAGTTTAAAGGAGATAGGCAGGGCATGTTTGATTCAAATTCCCTGAAAAGCAAAGTTGTTAAGGAAAATAGTGCACTTGAGGGAGCTAGAGCTAATGCTTTCAAATCTCAATATCCATCTTTTGTGTGGGTTGCTAAACAATCATACATCCATTGTAAATTTAACTTTTCAATACCATCCACCTTTGCCAAGAGCTTCTTGGGTTCAAAAGAGAATGGAGAAATTACAAATCTTGTGATGTTAGATGGAAGAGTTTGGAATGCCAAGTACATAGTAAGAAAACTACATACAAGGAGAATTTTTGAACTCTCTGGGGCTGGGTTTAGGGCATTAGCCAAGGCCAATGACCTTCAAGTTGCTGATGTTTGTGTCTTTGAACTCTTGGAAGGAAGAACCATCACTTTTCGAGTTTCGATCTTTCGAGGCACTTACCATTCGGATAATCGTACTCCTCCGTTGAAAGGACAAAGCAGAGTGGCTAATACTGAAGaacagagaaagaaaagaatgccAATAAAAACTGAAAGAGCTGAAATGACCTCTTCTGCCAAAGTTGAGAATGGTTCCAAATTCAATTCACAAGAGAAAGATTTGCATCATTCCGCCACCGAGTTTAAAGGAGGCAGGAAGGGCATGTTAGATTCAAATTTCCTGAAACGTAAAGTTCTTAAGGGAAAAAGTGCACTTGAGAGAGCTAATGCTTTCCAATCTCAATACCCATCTTTTGTGTGGGTTGCCAAACGATCATGCATCCATGGTACTTCTAACTTTGTTGTGCCGTGTGTGTTTTCCAGGAGGTTCTTGGGTTCAAAAAGGAATGGAGAAAGTACAAATCTTGTGATGTTGGATGGAAGAGTTTGGGTTGTGAAGTATATCATAAGGAAAATATCTACACAGACTGTGTTTGAACTCTCTTGTTCTGGGTTTAGGGCATTTGCCAAGGCCAATGACCTTAAAGTTGGTGATGTTTGTGTCTTTGAATTCAAGGGAGGAAGTACGGACACCTTTCAAGTTTTGGTCTTTCCAAACACTGATGATTCAGGACAAAACAGAGTGGCTCATAATGAAGAACAGAGGAAGAACAGAGTGGCAATTAAAACTGAATCTACTTAA 1665 0.412 MPSKHPSMPEYALFYKRLRSAPLRRRHKLMIPPGFVKKYGGDALPEVAILRLPNGAEWEVNLEKRNNGGGGGGDRVWFAKGWKEFAEYYSVFDGRLLVFGYNHSTFRFHVLILDSKTSLEIRYPSDVEKNREENFERGSLLCTGRRNCEDSVLPCKRRRVIDEGGRKVESAFNSVEKDLHHSTKKFKGDRQGMFDSNSLKSKVVKENSALEGARANAFKSQYPSFVWVAKQSYIHCKFNFSIPSTFAKSFLGSKENGEITNLVMLDGRVWNAKYIVRKLHTRRIFELSGAGFRALAKANDLQVADVCVFELLEGRTITFRVSIFRGTYHSDNRTPPLKGQSRVANTEEQRKKRMPIKTERAEMTSSAKVENGSKFNSQEKDLHHSATEFKGGRKGMLDSNFLKRKVLKGKSALERANAFQSQYPSFVWVAKRSCIHGTSNFVVPCVFSRRFLGSKRNGESTNLVMLDGRVWVVKYIIRKISTQTVFELSCSGFRAFAKANDLKVGDVCVFEFKGGSTDTFQVLVFPNTDDSGQNRVAHNEEQRKNRVAIKTEST 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1348 554 CDD B3_DNA 223 325 IPR003340 GO:0003677
Sto12g1348 554 CDD B3_DNA 424 526 IPR003340 GO:0003677
Sto12g1348 554 MobiDBLite consensus disorder prediction 532 554 - -
Sto12g1348 554 SMART B3_2 15 116 IPR003340 GO:0003677
Sto12g1348 554 SMART B3_2 225 327 IPR003340 GO:0003677
Sto12g1348 554 SMART B3_2 426 528 IPR003340 GO:0003677
Sto12g1348 554 Gene3D - 11 117 IPR015300 -
Sto12g1348 554 Gene3D - 203 327 IPR015300 -
Sto12g1348 554 Gene3D - 407 529 IPR015300 -
Sto12g1348 554 ProSiteProfiles B3 DNA-binding domain profile. 225 327 IPR003340 GO:0003677
Sto12g1348 554 CDD B3_DNA 13 114 IPR003340 GO:0003677
Sto12g1348 554 MobiDBLite consensus disorder prediction 344 359 - -
Sto12g1348 554 SUPERFAMILY DNA-binding pseudobarrel domain 218 325 IPR015300 -
Sto12g1348 554 PANTHER B3 DOMAIN-CONTAINING 346 525 - -
Sto12g1348 554 PANTHER B3 DOMAIN-CONTAINING 13 325 - -
Sto12g1348 554 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 346 525 - -
Sto12g1348 554 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 13 325 - -
Sto12g1348 554 ProSiteProfiles B3 DNA-binding domain profile. 14 116 IPR003340 GO:0003677
Sto12g1348 554 SUPERFAMILY DNA-binding pseudobarrel domain 420 525 IPR015300 -
Sto12g1348 554 MobiDBLite consensus disorder prediction 534 554 - -
Sto12g1348 554 SUPERFAMILY DNA-binding pseudobarrel domain 10 115 IPR015300 -
Sto12g1348 554 MobiDBLite consensus disorder prediction 332 370 - -
Sto12g1348 554 Pfam B3 DNA binding domain 14 115 IPR003340 GO:0003677
Sto12g1348 554 Pfam B3 DNA binding domain 228 326 IPR003340 GO:0003677
Sto12g1348 554 Pfam B3 DNA binding domain 437 526 IPR003340 GO:0003677
Sto12g1348 554 ProSiteProfiles B3 DNA-binding domain profile. 426 528 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1348 Sto-Chr12 8888873 8893754 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1348 8 325 B3 DNA Binding Superfamily AT3G18990 25.762 7.17e-16 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto12g1348 B3 1.2e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1348 - - lang:109359945 201.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1348 12 8888873 8893754 Sto12g1348 12 8888873 8893754 ECH