Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1347 ATGGCTTCTGCGCCCAATCTTACCCTATTTTTGAAGCCCATCCTTTCTGACTCCCTCCGTCTCCGCGATAAGCTTATGATTCCACCAGAGTTTGTGAAGAAATATGGTGGAGATGCGTTACCGGACACGGCGTTTCTTAAGCTTCCAAATGGAGCAGAATGGGAAGTGAATCTGGAGAAAAGAGATGGTGATCAAGTATGGTTTGTAAAGGGATGGAAAGAGTTCTCGGAGTATTACTCTCTATACGATGGCCGATTGCTGATTTTTGGGTATGACCATCCAACTTCTCGTTTTCATGTGCTTATATTTGACTTGGTGACTTCCCTGGAAATACAATATCCTTCCATTGGAAACACACGAAGTGAAGCAAGTTTTGAAAAAGGTTCATCATGCACTAATGATGAATCTGTATTGCCTTGTCTTCAACAATGTAAGAGGAAGAGAGTTATTGATGAGGAAAGAGGTCAAGAGGTTGATTTGCATCATTCCACAAAGAAGTTTAAAGGAGATAGGCAGGGCATGTTTGATTCAAATTTTCTGAAAAGTAAAGTTGTTAAGGGAAATAGTGCACTTGAGAGAGCTAATGCTTTCAAATCTCAAAATCCATCTTTTGTGTGGGTTGCTAAACGATCATACATCCATAGTAGTTCTAACTTTTCAATACCATCCAACTTTGCCAAGAGCTTCTTGGGTTCAAAAAAGAATGGAGAAAATACAAATCTTATGTTTGATGGAAGAGTTTGGGTTGCCAAGTATATCATaaggaaacaaaatacaagGAGTATGTTTGAACTCTCTTGTGCTGGTTTTAGGGCATTAGCCAAGGCTAATGACCTTAAAGTTGGACAAAGCAGAGAAGCCAATACTGAAGAACAGAGTAAGACAAGAGTTGAAATTAAAACTGAAATTACTTGTTCTGACAATGAGGCATTTGAAATATCCGAGACCCTTCAATTTCCTCCAAGAAACCCTATATTCTTAGAAAGCAAAATTTCAGAAGGTGCTGCTTTTGACAATTTCAACTCACAGAATCCTTTCTTCCAAATAACCATAGGAAAATCCCACAGCCAGaGATTACCAGTCTGGTTTGTAAAGAAGTACTTGAAAGTAGTTGGGGAACACATTGCTGAACTGATGGTTGATGAAGAGAAATTTTGGAGTGTTAAACTTATACATCATAGTGGGAAACCCTTATACTACTGTTACTTTTCCAGAGGTTGGAAAGCATTCGTGAGACAGAATAATCTACAAGTTGGAGATGCTTGCTCTTTTGAGTGGATTAACAATGGTAGAGATGAGAAGATGATTATGAGAGTTTGTATTTCCAAGCATTCCTCAGTAGAATCTAGCTCACTGATGAATTAA 1365 0.381 MASAPNLTLFLKPILSDSLRLRDKLMIPPEFVKKYGGDALPDTAFLKLPNGAEWEVNLEKRDGDQVWFVKGWKEFSEYYSLYDGRLLIFGYDHPTSRFHVLIFDLVTSLEIQYPSIGNTRSEASFEKGSSCTNDESVLPCLQQCKRKRVIDEERGQEVDLHHSTKKFKGDRQGMFDSNFLKSKVVKGNSALERANAFKSQNPSFVWVAKRSYIHSSSNFSIPSNFAKSFLGSKKNGENTNLMFDGRVWVAKYIIRKQNTRSMFELSCAGFRALAKANDLKVGQSREANTEEQSKTRVEIKTEITCSDNEAFEISETLQFPPRNPIFLESKISEGAAFDNFNSQNPFFQITIGKSHSQRLPVWFVKKYLKVVGEHIAELMVDEEKFWSVKLIHHSGKPLYYCYFSRGWKAFVRQNNLQVGDACSFEWINNGRDEKMIMRVCISKHSSVESSSLMN 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1347 454 Gene3D - 6 106 IPR015300 -
Sto12g1347 454 ProSiteProfiles B3 DNA-binding domain profile. 10 106 IPR003340 GO:0003677
Sto12g1347 454 CDD B3_DNA 202 282 IPR003340 GO:0003677
Sto12g1347 454 CDD B3_DNA 345 440 IPR003340 GO:0003677
Sto12g1347 454 ProSiteProfiles B3 DNA-binding domain profile. 342 445 IPR003340 GO:0003677
Sto12g1347 454 SMART B3_2 10 106 IPR003340 GO:0003677
Sto12g1347 454 SMART B3_2 204 295 IPR003340 GO:0003677
Sto12g1347 454 SMART B3_2 346 445 IPR003340 GO:0003677
Sto12g1347 454 Gene3D - 328 446 IPR015300 -
Sto12g1347 454 Gene3D - 185 302 IPR015300 -
Sto12g1347 454 SUPERFAMILY DNA-binding pseudobarrel domain 198 283 IPR015300 -
Sto12g1347 454 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 289 442 - -
Sto12g1347 454 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 5 283 - -
Sto12g1347 454 PANTHER B3 DOMAIN-CONTAINING 5 283 - -
Sto12g1347 454 PANTHER B3 DOMAIN-CONTAINING 289 442 - -
Sto12g1347 454 SUPERFAMILY DNA-binding pseudobarrel domain 340 441 IPR015300 -
Sto12g1347 454 Pfam B3 DNA binding domain 206 284 IPR003340 GO:0003677
Sto12g1347 454 Pfam B3 DNA binding domain 10 104 IPR003340 GO:0003677
Sto12g1347 454 Pfam B3 DNA binding domain 351 440 IPR003340 GO:0003677
Sto12g1347 454 CDD B3_DNA 9 104 IPR003340 GO:0003677
Sto12g1347 454 SUPERFAMILY DNA-binding pseudobarrel domain 5 104 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1347 Sto-Chr12 8882964 8886822 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1347 5 114 B3 DNA Binding Superfamily AT1G49475 43.243 4.64e-15 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto12g1347 B3 6.9e-13 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1347 12 8882964 8886822 Sto12g1347 12 8882964 8886822 ECH