Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1346 ATGGCTTTTCCGCCCAATCTTACCCTATTTTTGAAGCCCATCCTTTCTGACTGCCTCCGTCTCCGCGATAAGCTTATGATTCCGCAAGAGTTCGTGAAGAAATACGGCGGCGATGTGTTACCAGACACAGCGTTTCTTAAGCTTCCGGATGGAGCAGAATGGGAAGTGAAATTGGAAAAAAGGGGTGGTGATCAAGTTTGGATTGTAAAGGGATGGGAAGAGTTCGCAGAGTATTACTCTCTGTACGATGGCCGAATGCTGGTTTTTGGGTATGACCATTCGGCTTCTCGTTTTCATGTCcttatatttgacttgatgaCTTACCTGGAAATACAATATCCTTCAAATGGAAACACACAAAGTGAAGCAAGTACTGAAAGAGGTTCATTATGCACTAATGATGATGAGGCTGTATTGCCTTGTCTTCAACCATGTAAGAGGAAGAGAGTTACTGAGGAGGAAGGAGGTCATGAGGTTGATAATGATTTGCATCATTCCACTAAGAAGTTTAAAGGAGATGGGCAGGGCATATTTGATTCAAATTTCCTGAAAAGTAAAGTTGTCAAGGAAAATAGTGCACTTGAGAGAGCTAATGCTTTCAAATCTCAATATCCATCTTTTGTGTGGGTTGCTAAACAATCATACATCCATAGTACTGCTAATTTTGCAATACCATCCAACTTTGCCAGGAGCTTCTTGGGTTCAAAAGAGAATGGAGAAAGTACAAATCTTGTGGATTTAGATGGAAGAGTTTGGGTTGGCAAGTATGTCATAAGGGAAAAAAAGACAAAGACAGCGTTTGAACTCTCTAGTGCTGGGTTTAGAGCATTAGCCAAGGCCAATGACCTTAAAGTTGGTGATGTTTGTGTCTTTGAACTCATGGGAGGAACAACCATCACTTTTCAAGTTTTGATCTTTCGGAACACGGACGATTCAAATACTCGTACTGAAGGACAAAGCAGAGAAGTCAATACTGAAGAACAGAGCAAGAGATTAGTGGAAATTAAAACTGAAATTACTTGTTCTGACAATGAGGCTTTTGAAATATCCGAGACCCTTCAACTTCCTCCAAGAAACCCTAAATTCACAGAACACAAAATTTCAGAAGGTGCTGCTTTTGACAATTTCAACTCACAGAATCCTTTCTTCCAAATAACCATAGGAAAATCCCACAGCCAGGGAATACCAGTTCGGTTTGTGAAGCACCTAAAAGTTGGGGAAAACCTTGCTGAACTGAAGGTTGATGAATTGAGACGTTGGAGTGTTAAGATTATGTGTAGTGGGGAGCCCATACGCTACTGTTACTTTTCTGCAGGTTGGAATTCATTTGTGAAACAGAATCATCTTCAAGTTGGAGATGCTTGCTCTTTCGAGTTGATTAGCAATGGCAGTGATGACAAAATGATTATGAGAGTTTGTATTTTCAAGCATTCCTCATGA 1440 0.4021 MAFPPNLTLFLKPILSDCLRLRDKLMIPQEFVKKYGGDVLPDTAFLKLPDGAEWEVKLEKRGGDQVWIVKGWEEFAEYYSLYDGRMLVFGYDHSASRFHVLIFDLMTYLEIQYPSNGNTQSEASTERGSLCTNDDEAVLPCLQPCKRKRVTEEEGGHEVDNDLHHSTKKFKGDGQGIFDSNFLKSKVVKENSALERANAFKSQYPSFVWVAKQSYIHSTANFAIPSNFARSFLGSKENGESTNLVDLDGRVWVGKYVIREKKTKTAFELSSAGFRALAKANDLKVGDVCVFELMGGTTITFQVLIFRNTDDSNTRTEGQSREVNTEEQSKRLVEIKTEITCSDNEAFEISETLQLPPRNPKFTEHKISEGAAFDNFNSQNPFFQITIGKSHSQGIPVRFVKHLKVGENLAELKVDELRRWSVKIMCSGEPIRYCYFSAGWNSFVKQNHLQVGDACSFELISNGSDDKMIMRVCIFKHSS 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1346 479 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 6 308 - -
Sto12g1346 479 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 326 476 - -
Sto12g1346 479 Pfam B3 DNA binding domain 388 473 IPR003340 GO:0003677
Sto12g1346 479 Pfam B3 DNA binding domain 208 308 IPR003340 GO:0003677
Sto12g1346 479 Pfam B3 DNA binding domain 22 104 IPR003340 GO:0003677
Sto12g1346 479 PANTHER B3 DOMAIN-CONTAINING 326 476 - -
Sto12g1346 479 PANTHER B3 DOMAIN-CONTAINING 6 308 - -
Sto12g1346 479 SUPERFAMILY DNA-binding pseudobarrel domain 200 308 IPR015300 -
Sto12g1346 479 Gene3D - 6 106 IPR015300 -
Sto12g1346 479 CDD B3_DNA 381 476 IPR003340 GO:0003677
Sto12g1346 479 ProSiteProfiles B3 DNA-binding domain profile. 378 478 IPR003340 GO:0003677
Sto12g1346 479 CDD B3_DNA 205 307 IPR003340 GO:0003677
Sto12g1346 479 SUPERFAMILY DNA-binding pseudobarrel domain 4 104 IPR015300 -
Sto12g1346 479 Gene3D - 187 311 IPR015300 -
Sto12g1346 479 Gene3D - 363 478 IPR015300 -
Sto12g1346 479 ProSiteProfiles B3 DNA-binding domain profile. 10 106 IPR003340 GO:0003677
Sto12g1346 479 SUPERFAMILY DNA-binding pseudobarrel domain 376 477 IPR015300 -
Sto12g1346 479 CDD B3_DNA 9 104 IPR003340 GO:0003677
Sto12g1346 479 SMART B3_2 382 478 IPR003340 GO:0003677
Sto12g1346 479 SMART B3_2 207 309 IPR003340 GO:0003677
Sto12g1346 479 SMART B3_2 10 106 IPR003340 GO:0003677
Sto12g1346 479 ProSiteProfiles B3 DNA-binding domain profile. 207 309 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1346 Sto-Chr12 8876199 8880305 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1346 9 310 B3 DNA Binding Superfamily AT3G18990 25.215 2.24e-18 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto12g1346 B3 2.5e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1346 - - ccaj:109791708 209.534