Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1345 ATGGCTTCTAAATATGAGTATGCACCTAAGCTTACCCTCTTTTTCAAGCCTATACTTCCTGTCAGCCTCCATCACAAGCTTATGATTCCAACCAAGTTTGTGAAGAAATATGGTGGAGATGCGTTACCAGACACAGCTTTTCTTAAGCTTCCGAATGGAGCAGAATGGGAAGTAAAATTGGAGAAAGAAAATGGTGAAGAAGTATGGTTTGCTAAGGGATGGAAAGAGTTTGCTGAGCATTACTCTCTATTCCAAGGTCGAATAGTGGTTTTTGGGTATCGCCATTCAACTTGCCGTTTTCATGTCCTTATATTTGACTTGGCGAGTTCCTTGGAAATTCAATATGATCCTTCCAATGGGAAAAAgcaaagtaaaaggaaaaattgtgaCGACTCAGTAGTATTGCCTTGTAAGAGGAAGAGAGTTATTGAGGAAGGTCAAAAGGTTGAGAATATTGCTTTCAATTCACAAGAGAAAGATTTGCATCATTCCACCAAGGAGTTTAAagGAGATAGGCAGGGCATGTTTGATTCAAAGTTCCTGAAATGTAAAGATGTTAAGGGAGGAAATAGTGCACTTGAGAGAGCTAATGCTTTCAAATCTCAATACCCATCTTTTGTGTGGGTTGCTAAACAATCATACATCCATAGTTCTTCTAACTTTGCAATACCATCCAACTTTGCCAAGAGCTTCTTGGGTTCAAGAAAGAATGGAGAAAGTACAAAGCTTGTGATGTTAGATGGAAGAGTTTGGGTTGCCAAGTATATCACAAGGAAAAGAAGTACAAAGACAGTGTTTGAACTCTCTAGTGCTGGATTTAGGGCATTAGCCAAGGCCAATGACCTTAAAGTTGGTGATGTTTGTGTCTTTGAACTCTTGGGAGGAACAACCATCACTTTTCAAGTTTTGATCTTTCGAAACAACGGTGATGATTCAGGACAAAGCAGAGTAGTGGCCAATACTgaagaacaaagaaagaaaagagtggCCATTAAAACTGAAATGACTTGTTCTGGCAATGAGGAATTTGGAATATCCAACACCCTTCACCTTCCTCCAAGAAACCCTAATTTCACACAAGCCAAAATTTCAGAAGGTGCTGCTTCTCACAATTTCAACCCACAGAATCCATAG 1134 0.3801 MASKYEYAPKLTLFFKPILPVSLHHKLMIPTKFVKKYGGDALPDTAFLKLPNGAEWEVKLEKENGEEVWFAKGWKEFAEHYSLFQGRIVVFGYRHSTCRFHVLIFDLASSLEIQYDPSNGKKQSKRKNCDDSVVLPCKRKRVIEEGQKVENIAFNSQEKDLHHSTKEFKGDRQGMFDSKFLKCKDVKGGNSALERANAFKSQYPSFVWVAKQSYIHSSSNFAIPSNFAKSFLGSRKNGESTKLVMLDGRVWVAKYITRKRSTKTVFELSSAGFRALAKANDLKVGDVCVFELLGGTTITFQVLIFRNNGDDSGQSRVVANTEEQRKKRVAIKTEMTCSGNEEFGISNTLHLPPRNPNFTQAKISEGAASHNFNPQNP 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1345 377 ProSiteProfiles B3 DNA-binding domain profile. 12 108 IPR003340 GO:0003677
Sto12g1345 377 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 9 307 - -
Sto12g1345 377 Gene3D - 9 108 IPR015300 -
Sto12g1345 377 Gene3D - 187 309 IPR015300 -
Sto12g1345 377 PANTHER B3 DOMAIN-CONTAINING 9 307 - -
Sto12g1345 377 SMART B3_2 14 108 IPR003340 GO:0003677
Sto12g1345 377 SMART B3_2 206 308 IPR003340 GO:0003677
Sto12g1345 377 CDD B3_DNA 13 106 IPR003340 GO:0003677
Sto12g1345 377 Pfam B3 DNA binding domain 15 106 IPR003340 GO:0003677
Sto12g1345 377 Pfam B3 DNA binding domain 207 307 IPR003340 GO:0003677
Sto12g1345 377 ProSiteProfiles B3 DNA-binding domain profile. 206 308 IPR003340 GO:0003677
Sto12g1345 377 CDD B3_DNA 204 306 IPR003340 GO:0003677
Sto12g1345 377 SUPERFAMILY DNA-binding pseudobarrel domain 199 308 IPR015300 -
Sto12g1345 377 SUPERFAMILY DNA-binding pseudobarrel domain 8 106 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1345 Sto-Chr12 8869305 8872106 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1345 4 132 B3 DNA Binding Superfamily AT1G49475 37.692 7.64e-17 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto12g1345 B3 9.8e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1345 - - lja:Lj1g3v3690290.1 192.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1345 12 8869305 8872106 Sto12g1345 12 8869305 8872106 ECH