Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1339 ATggactcttcttcttcctcctctccccACTCTCACTCCCCCAACTGGctcgctttctctctctctaacccctTATCCTCTTCCTCCGCCTCCTCTCACTTCCCCCTTTTCCCTCTCACAGGTAGTAGCACCGCCGTCGGCGCCTCGCCGGAAGCCAAGGATGCGGTGGTTGGAGGAGGAGGTCCGACACAGAGTACTGGACTCTCCATGCTCACATGCGGCCCTAAGTTCGAGGACTTTctcggcggcggcggcggcggcgccgCGGCTGTATCTGCCGCGCCGCCGCAGTTCTCTACCGCCGACAGTACGCTGAGCACCGTGGTGGAGAACGAGATGTACGATTCCGAACTGAAGACCATAGCCGCCAGCTTCCTCCGCGGCTTCGCCGCCTCCGGAGGGCAAGCCGAGCCGCAGCAGAAGCAGGCGCTGGCTCCGTCCGAGCCGTCTCCGAAGAAGAGCGTCGATACATTCGGCCAACGCACCTCCATCTACCGCGGCGTCACACGGTGGGGATTCGATTCgCATAGATGGACGGGAAGATACGAAGCTCATCTATGGGATAACAGTTGCAGAAGAGAAGGGCAAAGTCGGAAAGGAAGACAAGGTGGCTACGATAAGGAAGATAAGGCAGCTAGAGCTTATGATCTCGCAGCTCTCAAGTACTGGGGTCCGACCACCACTACCAACTTTCCTATTTCAAACTACCAGAAGGAACTGGAAGAAATGAAGAACATGACTAGGCAGGAATTCGTTGCTTCTCTCCGAAGGAAGAGTAGTGGTTTCTCCAGAGGCGCCTCAATATATAGAGGAGTGacgagGCATCACCAGCATGGTCGATGGCAGGCAAGAATAGGCAGAGTCGCCGGAAACAAAGACCTGTACCTTGGCACTTTCAGCACACAAGAAGAAGCAGCGGAGGCATATGACATAGCAGCCATAAAATTCAGAGGCTTAAACGCTGTAACCAACTTTGACATGAGCCGGTACGACGTGAAGAGCATCGCGAATAGCAGCCTCCCGATTGGAGGATTATCCGGCAAGAACAAAACTTCCGTTGACTCCCCACCGTCGGATCATAGCAAAAGCCTTGAGGGAGCTCGATCCGACGATCGAGATCTCTCCTCTGTCAACTCCTCGGTAACATTCGCATCTCAGCCAACACCACCATTGCCGTCGTCGCTACCATCAAGCTCGAGCTCTCTGAGCTTTGCCATACCCATCAAACAGGACACTTCAGATCATCATTACTGGTCCCTCCTTGCTGGGTATAATAACAAAAACCCTTCATTCCAATCACCTTCCTCCTTGCCCTTCAGTGTGGATTTCTCTACACAGCCTTCAAGTGCAAGCAATGAGAGCAACcataacaacaataatagtagtagtagtatcAATAATGCAGCATTTTTCAATGGTGGAGGAGGAATCTTTGTTCATCAGCAACAAAATGCtagtgttggtggtggtggtggtggtgtttCTTCTGGTTTGATCCCATTGACTACTAGTACTGCTCCTATTGCTTTAAATAGTAATAGTGGTTTTGAGAGCACCTCTGGTTATGGAAACTGGAGTATTGGACCTACTCTGCACACCTTCCAAACACATGCAAAACCCAGTCTCtttcaaaccccaatttttggAATGGAATGA 1656 0.4674 MDSSSSSSPHSHSPNWLAFSLSNPLSSSSASSHFPLFPLTGSSTAVGASPEAKDAVVGGGGPTQSTGLSMLTCGPKFEDFLGGGGGGAAAVSAAPPQFSTADSTLSTVVENEMYDSELKTIAASFLRGFAASGGQAEPQQKQALAPSEPSPKKSVDTFGQRTSIYRGVTRWGFDSHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYQKELEEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSSLPIGGLSGKNKTSVDSPPSDHSKSLEGARSDDRDLSSVNSSVTFASQPTPPLPSSLPSSSSSLSFAIPIKQDTSDHHYWSLLAGYNNKNPSFQSPSSLPFSVDFSTQPSSASNESNHNNNNSSSSINNAAFFNGGGGIFVHQQQNASVGGGGGGVSSGLIPLTTSTAPIALNSNSGFESTSGYGNWSIGPTLHTFQTHAKPSLFQTPIFGME 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1339 551 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 127 466 - -
Sto12g1339 551 Gene3D AP2/ERF domain 164 234 IPR036955 GO:0003700|GO:0006355
Sto12g1339 551 Gene3D AP2/ERF domain 268 328 IPR036955 GO:0003700|GO:0006355
Sto12g1339 551 MobiDBLite consensus disorder prediction 136 157 - -
Sto12g1339 551 CDD AP2 163 234 IPR001471 GO:0003700|GO:0006355
Sto12g1339 551 SUPERFAMILY DNA-binding domain 267 328 IPR016177 GO:0003677
Sto12g1339 551 MobiDBLite consensus disorder prediction 341 398 - -
Sto12g1339 551 MobiDBLite consensus disorder prediction 437 463 - -
Sto12g1339 551 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 127 466 - -
Sto12g1339 551 MobiDBLite consensus disorder prediction 341 359 - -
Sto12g1339 551 SMART rav1_2 164 238 IPR001471 GO:0003700|GO:0006355
Sto12g1339 551 SMART rav1_2 268 332 IPR001471 GO:0003700|GO:0006355
Sto12g1339 551 SUPERFAMILY DNA-binding domain 164 234 IPR016177 GO:0003677
Sto12g1339 551 Pfam AP2 domain 268 318 IPR001471 GO:0003700|GO:0006355
Sto12g1339 551 MobiDBLite consensus disorder prediction 373 388 - -
Sto12g1339 551 ProSiteProfiles AP2/ERF domain profile. 268 326 IPR001471 GO:0003700|GO:0006355
Sto12g1339 551 ProSiteProfiles AP2/ERF domain profile. 164 232 IPR001471 GO:0003700|GO:0006355
Sto12g1339 551 CDD AP2 267 328 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1339 Sto-Chr12 8794849 8797630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1339 112 551 AP2-EREBP Transcription Factor Family AT5G57390 54.762 9.97e-141 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Sto12g1339 AP2 6.3e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1339 K09285 - gmx:100803558 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1339 12 8794849 8797630 Sto12g1339 12 8794849 8797630 ECH