Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1317 ATGGGAATCGAAAGAGGAGGCCTCAAGGGCTTTCGCACCGGCGCCTGGGCCGGCGCGCCGTCCAAGCTCTGCGACTCCTGCAAGTCGGCGGCGGCTGCTGTTTTCTGCCGAGCCGATTCCGCCTTCCTCTGTATGCTCTGCGACAACAGAATCCACTGCGCCAACAAGCTCGCGTCGCGCCACGAGCGCGTGTGGATGTGCGAGGTGTGCGAGCAAGCCCCTGCATCCGTCACGTGCAAGGCCGACGCTGCCGCTCTCTGTGTCACGTGCGATTCGGATATCCATTCCGCCAACCCGCTCGCCCGACGCCACGAGCGGGTCCCCGTCGAGCCCTTCTTCGATTCCGCTGACTCCGTCGCCAAATCCTCAGCCGCCGCGTTCAACCTTCTCGTCCCAACCGATAACGGAATAGGACCCGACGGGTTCCCCCACGATGATCCCGAGTCCGTCTCGTGGCTGATTCCGAACCCGAATTTCAACCCGAAGATTACGGATGGTCCGGATGTGAAACCCGGAGATATTTTTTTCCCGGATATGGAATATCCCTTCCTGGATTTCGATTATTCCAACTCGTTCGATCCGTGTGATGCTAACAATCACAACGCGGGTAATAATAACGACAGCGTCGTCCCGGTTCAGACTCCGGTGATGAATCATATTTCAGAGAGTTGCTTCGACATCGATTTTTGCAGATCGAAGCTCTCTTCATTTAGCTATCCGACACAGTCGTTTAGTCGTCAAAGCGTATCGTCGTCGTCGATTGACGTAGGAGTGGTCCCAGACGGAGGAGGGAATACGGTGTCCGACACGTCGTTTCCATTCGGCAATAGTTCGGAATCGAGCGGAGTGGTATCTGCGAGTAATAATAATGGTGGTGGTCTGAACCGGGAGGCTCGGGTTTTGAGGTAcagagagaagaggaagaaccGGAAGTTTGAGAAAACCATACGCTACGCTTCACGAAAGGCGTACGCGGAAACCCGGCCCAGGATCAAAGGCCGGTTCGCCAAGCGGACCGAGACGGACTCGGATTTGGACCGACTCTTTAGCCCGGTTGCCCCCACCGCAGATCTGCTTCTGGATTCTCAGTACGGCGTCGTCCCCTCGTTTTAA 1113 0.5571 MGIERGGLKGFRTGAWAGAPSKLCDSCKSAAAAVFCRADSAFLCMLCDNRIHCANKLASRHERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFFDSADSVAKSSAAAFNLLVPTDNGIGPDGFPHDDPESVSWLIPNPNFNPKITDGPDVKPGDIFFPDMEYPFLDFDYSNSFDPCDANNHNAGNNNDSVVPVQTPVMNHISESCFDIDFCRSKLSSFSYPTQSFSRQSVSSSSIDVGVVPDGGGNTVSDTSFPFGNSSESSGVVSASNNNGGGLNREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTETDSDLDRLFSPVAPTADLLLDSQYGVVPSF 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1317 370 ProSiteProfiles Zinc finger B-box type profile. 19 66 IPR000315 GO:0008270
Sto12g1317 370 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 11 370 IPR045281 GO:0009909
Sto12g1317 370 ProSiteProfiles Zinc finger B-box type profile. 62 109 IPR000315 GO:0008270
Sto12g1317 370 CDD Bbox1_BBX-like 67 109 - -
Sto12g1317 370 Pfam CCT motif 296 338 IPR010402 GO:0005515
Sto12g1317 370 CDD Bbox1_BBX-like 23 66 - -
Sto12g1317 370 ProSiteProfiles CCT domain profile. 296 338 IPR010402 GO:0005515
Sto12g1317 370 Pfam B-box zinc finger 64 109 IPR000315 GO:0008270
Sto12g1317 370 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 11 370 - -
Sto12g1317 370 SMART bboxneu5 67 109 IPR000315 GO:0008270
Sto12g1317 370 SMART bboxneu5 19 66 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1317 Sto-Chr12 8593600 8594807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1317 1 370 C2C2-CO-like Transcription Factor Family AT5G57660 53.927 1.85e-114 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Sto12g1317 zf-B_box 4.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1317 - - gmx:100792197 467.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1317 12 8593600 8594807 Sto12g1317 12 8593600 8594807 ECH