Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1315 ATGGTATCCACCTTCTGCTGCTTTGGCTCACAAAAGATCGATGAAGCGCCAACAACAACATTTGGTGGCGTTGTTAAGAACTCATGGAGAATATTCACATACAAGGAGTTGCACACAGCTACCAATGGATTCAGTGAGGAAAACAAACTAGGTGAAGGTGGATTTGGAAGTATAGCAGTGAAGAAACTGAAAGCAATGAACTCAAAGGCTGAGATGGAGTTTgcagtggaagtggaagttctGGGAAGGGTTCGTCACAAGAACTTATTAGGGCTTAGAGGGTATTGTGCAGGAGGGGCTGATCAAAGGCTCATAGTCTATGATTATATGCCAAATCTAAGCCTTCTTTCTCATCTTCATGCTCATTTCTCTTCCGATCTTCAGCTCCACTGGCAAAGGAGATTCAACATCGCCATTGGCTCCGCTCAGGCCTTATTGTACTTGCACCATGAGGTGACACCCCACATCATCCATAGGGACATCAAAGCAAGCAACGTCCTTCTCAATTCAGATTTCGAGCCACTGGTCGCAGATTTCGGTTTTGCGAAGCTAATCCCAGAAGGAGTTAGCCACATGACTACCCGTGTTAAGGGCACTTTAGGGTACTTAGCCCCCGAATACGCAATGTGGGGGAAAGTGTCCGAGAGTTGCGACGTTTATAGCTTCGGAATCCTTTTGCTAGAACTTGTGACCGGAAGAAAGCCCATAGAGAAGCTTCCTAATGGGCTCAAGCGAACGATCACCGAGTGGGCCGAGCCGCTGATAGCCCAAggaaggtttagggatttggtgGACCCAAGACTTAGAGGGAACTACGATGAGAATCAAGTGAAGCAAACCGTCAATGTGGCTGCACTTTGTGTGCAAACCGAGCCCGAGATGCGGCCCAATATGAAGCAAGTGGTTAGCTATCTCAAAGGATGTGAACCTCAGGCCCAAGTGATGAAGACGAGGATAGATGGTGTGAAGTATAGTGATGAATTAGTGGAACTTGACCAAACcagtgaagatgatgatgatgatgaagatgaaggcaAGGGTTATGGTGTTTTTAGTGCACTACATGTGGAAAAGATGCATGATCCTTACAAGCATGGTGGACACAAGAAAATGGCTAAACCAGTTTGA 1128 0.4335 MVSTFCCFGSQKIDEAPTTTFGGVVKNSWRIFTYKELHTATNGFSEENKLGEGGFGSIAVKKLKAMNSKAEMEFAVEVEVLGRVRHKNLLGLRGYCAGGADQRLIVYDYMPNLSLLSHLHAHFSSDLQLHWQRRFNIAIGSAQALLYLHHEVTPHIIHRDIKASNVLLNSDFEPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELVTGRKPIEKLPNGLKRTITEWAEPLIAQGRFRDLVDPRLRGNYDENQVKQTVNVAALCVQTEPEMRPNMKQVVSYLKGCEPQAQVMKTRIDGVKYSDELVELDQTSEDDDDDEDEGKGYGVFSALHVEKMHDPYKHGGHKKMAKPV 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1315 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Sto12g1315 375 Pfam Protein tyrosine and serine/threonine kinase 56 305 IPR001245 GO:0004672|GO:0006468
Sto12g1315 375 CDD STKc_IRAK 50 307 - -
Sto12g1315 375 ProSiteProfiles Protein kinase domain profile. 10 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto12g1315 375 SMART serkin_6 44 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto12g1315 375 Gene3D Transferase(Phosphotransferase) domain 1 110 327 - -
Sto12g1315 375 PANTHER OS01G0750732 PROTEIN 1 373 - -
Sto12g1315 375 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 1 373 - -
Sto12g1315 375 Gene3D Phosphorylase Kinase; domain 1 17 109 - -
Sto12g1315 375 SUPERFAMILY Protein kinase-like (PK-like) 25 305 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1315 Sto-Chr12 8584315 8587452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1315 7 352 Trihelix Transcription Factor Family AT1G70460 40.800 5.64e-83 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Sto12g1315 PK_Tyr_Ser-Thr 4.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1315 - - pop:18100538 569.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1315 12 8584315 8587452 Sto12g1315 12 8584315 8587452 ECH