Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1312 ATGGCCGGTGACACTGAATTAAAGGTAAAAATAGAGATGGTTGATGGTGTGGTGGGGGATGTGACCATTACAGCAAATAGAACAAACTATGTGGAATTCACACATCCTTATATGGAGTCCGGAGGTGCCATTCAATTCATGGAACGTGGTAATGCAAATGCAGATCATGCAAGATTGCAAAATTCAACACACAAGGAAATGCTTAGGGGGGTTTCAATCGTCACACTTCCTCTAGCACAAGTGGTTCTTCCTCAAAGAGAATCAGTCTCAAAGAAGAGTTCAAGGTTTGTGTTGGTGACGTGGTTGATTTTGGCATTTGTTCTGATGCAGAGTTACTCGGCAAGCTTGTCCTCATTCTTAACAGTAGGCCAGTTGCGAGCTAATTTAGTGAATGATATGAAATCCATTGGATATCAGTGTGGCTCAGAATATCTCAGAAAATTATTGGAGGACCAATTGAGTTTTAAAGCTGAAAGGCTGAGGCCACTTTGTAGTATTGAAGAATACAGGGAAGCTCTAGACAGAGGAAGGTACAATGGTGGTGTTGATGCAATATTTGATGAAGTTCCCTACATTAAGGTCTTCCTCAATCAATATGGTTCCTCCAATTATACTATGGTCGGTCCTAGGTACCACACTAATGGAGGATTTGGCTTTGCATTTCCAAGATACTCTAACTTAACATTTGAGTTTTCTAGAGCTATATTGAATATGAGTGATTCTATGGAAATGAAGAAGATTGAAAGGAGATATTTTGGAAGGAGTGATGAGGATGAAGTTGTGGCCTCATCATCATCAGACACTCCTAGTCTTACTACGCGTAGCTTTTCGGGGTTGTTCATGATAACTGGAATTCTTACATCCTTAGCTTTGATGGTGTCTGAAAGACATGTTATTTTGAAAAAAGTAATGTCGGCAAGAAAATATTTGTTCATTTCACGTTCTGCGAAGCCTAGTCTTGAATCAGGATCAGGGGATGGTTCTATTAGCAGAAGAAATGTTGGAACAGCTGCTCAATACGATGTTGTGGTGGGAGATGTGACAATCGTGGCGAACCGTTCCAAGAGAGGTAGTCGTGAAGAACTGCTCGAGATTCGTACTAATGGTTTGGCTACTATTGACATTCGTATTGATGCAAAGTTACACTGCGAGCTTGACTTCAATGTTGACGGTGGATCAGCTTCAACCCAGTTTTCTGAGCGTGAATGA 1209 0.4103 MAGDTELKVKIEMVDGVVGDVTITANRTNYVEFTHPYMESGGAIQFMERGNANADHARLQNSTHKEMLRGVSIVTLPLAQVVLPQRESVSKKSSRFVLVTWLILAFVLMQSYSASLSSFLTVGQLRANLVNDMKSIGYQCGSEYLRKLLEDQLSFKAERLRPLCSIEEYREALDRGRYNGGVDAIFDEVPYIKVFLNQYGSSNYTMVGPRYHTNGGFGFAFPRYSNLTFEFSRAILNMSDSMEMKKIERRYFGRSDEDEVVASSSSDTPSLTTRSFSGLFMITGILTSLALMVSERHVILKKVMSARKYLFISRSAKPSLESGSGDGSISRRNVGTAAQYDVVVGDVTIVANRSKRGSREELLEIRTNGLATIDIRIDAKLHCELDFNVDGGSASTQFSERE 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1312 402 SUPERFAMILY Periplasmic binding protein-like II 14 254 - -
Sto12g1312 402 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 43 310 - -
Sto12g1312 402 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 12 41 - -
Sto12g1312 402 Gene3D - 137 258 - -
Sto12g1312 402 Gene3D - 8 70 - -
Sto12g1312 402 SMART GluR_14 2 254 IPR001320 GO:0015276|GO:0016020
Sto12g1312 402 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 12 41 - -
Sto12g1312 402 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 310 - -
Sto12g1312 402 Pfam Ligand-gated ion channel 254 285 IPR001320 GO:0015276|GO:0016020
Sto12g1312 402 Pfam Bacterial extracellular solute-binding proteins, family 3 13 253 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1312 Sto-Chr12 8540898 8553969 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1312 15 293 Ion Channels AT2G29120 36.196 5.31e-44 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1312 K05387 - aip:107641909 257.299