Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1311 ATGGcaagcccaaacccaaattaCTACTATAATTACTATGGATACCTTATAATAATTTCTTGTCTTGTCTTGTTTTCTGGGTTTGAGTTTGGAGCAAGTGATGATTCAGTTTCCCTACTGGGAGGGAAGAAGTTGATAATTGGTGTGCCTAAGAAATCTGGTTTCACTCAATTTGTGGATGCACAAACCAATCCTTCCAATAAGACTCAGTCGGTGAAGGTTACTGGCTATTCCATTGACGTTTTTAATGCTACGCTTGCTTATTTGAGTTTATATCACACAATTTCTTATGAGTTTAGAGCTTTCGTTAATGATGATGGAAGCAGGGCTGGGGATTACAACCAATTACTCTACCAGATTTATCAAAAAAAGtaTGATGCTGTAGTGGGAGATGTGACTATTGTGGCGAATAGATCAAACTATGTGGATTTCACATTACCTTATGCAGAGTCAGGCGTGAAGAtgctagtaaaagttggacatGATCGACACTTGCGCATGTGGATTTTTCTAGCACCTTTTAGTTGGGATCTATGGCTctccattattattttttgcatttttatcGGAGTTATTATACACTTCATGGAACGTAATGTAAATAataaagaagatgatgaaggagTAGAAAATTCATCACGTAGGGAACAACTTACCAGAGTATCAATCCTGTGGCTTCCTTTAGCACAAGTCGTCCTTCCTGAAAGAGAATCAGTAGTGAAGAATTGCTCTAGATTTGTGCTGGTGTTGTGGTTGATATTAGCGTGTATTCTGATGCAAAGTTACACAGCAAGCTTGTCATCGATCTTGACAATAAATCAATTGCAACCTAATTACCCTAATGCGAACGATCTTAGGAAAGACCCTGGAATCATTGTGGGATACCAGGATGGGTCTTTTGTCAAAGAATTATTGGGAGACCCAAACCGCTTGGGCTTTGAGAAATCAAGGTTGAAGAATTACAGTGGGATCGATGAATATAAGGATGCTTTAGACAAAGGAAGCCGTAAGGGTGGTGCTGATGCTATTTTTGATGAGGTTCCCTACATTAAGGTCTTCCTCAAGAGGTATGGTTCCAAGAATTATGCTATGGTCGGACCTAGATACCGCACAGATGGATTTGGCTTCGCATTCGCGAAAGATTCCAACCTAACCTCGTACTTTTCAAGAGCCATATTAAATGTAACCGAGGGTGAAGAAATAGAGGAGATTGAAGAGAGATATTTTGGAACAAGTGACGACGATGAACTCCAAGACCAATATTCTACCTCCTCCTCCGACGACACTACGGGTCCAAGCCTCACGTCCCACAGCTTCGCAGGTGGTGGTGATGATGCATCATCATGCAGTTCCATTAGGAAGAAGTTGAAAGTTGGAGTGCCTAAGAAATCTGATTTCAAAGAATTTGTGGATGCAGAATCGAGTGCTACCAATAAGAGCCAATTGGTGAAGCTAAGTGGGTATTCCATTGACGTTTTCAATGCTACAGTGGCTCATCTCCAAAGTGTAGGTTGCAATATCTCTTTTGAGTTTGAAGCTTTTGCAGATGATGATGGAAATAGTGCTGGGACTTATGACGACCTCCTCCACCAGATTGGTAAAGGAAAGtaTGATGCGGTGGTCGGAGATGTAACGATCGTGTCAAATCGATCAAATTATGTGGATTTCACACTACCATATGCTGAGTCCGACGTGAAGATGCTTGTGAAAGTTGGACATGTTCCACACTTGAACATGTGGATTTTTCTAGCACCTTTTAGCTGGGACTTGTGGCTATCCATCATCATTTTCTGTATTTTTGTTGGAGCTATTATACGGTTCATGGAACGTAATAATATTGTAGTAAATGGAGATGGAGGAGTTGAATCACAACGAAGGCAACGGATTACTACAGTTTCAGTCTTCTGGCTTCCTCTAGCACAAATGGTCATTCCTGAAACATTTGTGCTGGCTCAAAGTTACACAGCAAGCTTGTCATCAATCTTGACCGTAGATCAGCTGAAACCTAATTACCCTAATGTGAATCATCTTAGAAGACACCATGAAATCAATGTGGGTTACCTCCGAGACTCATTTGTCAGAGATTTATTGGAAAACCCACAAGGCTTGAACTTTGAGAATTCAAGGTTGAGGAATTATAGTGGGATTGAAGAATATAAGGATGCTTTAGACAAAGGAAGTCGTAAGGGTGGTGTTGATGCTATTTTTGATGAAGTTCCCTACATTAAGGTCTTCCTCAACAAGTATGGTTCCAAAAATTACGCTTTGGTGGGACCTAAGTATCGCACAGATGGATTTGGTTTTGCATTCCCAACGGGCTCTAAATTAACCTCGTACTTCTCTAGAGCCATATTAAATGTAActgaaaataaagaaataatggACGAGATTGAACGGAAATACTTTGGAAACAACGATGACGACGAACTCGAAGACCATTGGAATTCGTCATCAGACGACACTCCCAGCTTCACCACATATAGCTTCGCAGGTTTATTCATGGTAGTTGGTGTTCTTGCAATTTTAGGTGTGCTAGTGTCTGAAAGTATAATAATGTGGCGAAAATATGTTATGCTGGCTAAGACATATGGGCAACGAATATTGTTGAGTCGGACTTCTAGAAATGTTACTCAACCGTCCGTGGAAAGTTCTAGAAACAAATCAGGAGATATTGTGGGCTCGGCAGATATTGAACCAAATATTATCCATCCAAAAGTACGTTCCAGATCTCTTTCCAGCATAGATATTGAAATGTTGCCTGTATAA 2766 0.3912 MASPNPNYYYNYYGYLIIISCLVLFSGFEFGASDDSVSLLGGKKLIIGVPKKSGFTQFVDAQTNPSNKTQSVKVTGYSIDVFNATLAYLSLYHTISYEFRAFVNDDGSRAGDYNQLLYQIYQKKYDAVVGDVTIVANRSNYVDFTLPYAESGVKMLVKVGHDRHLRMWIFLAPFSWDLWLSIIIFCIFIGVIIHFMERNVNNKEDDEGVENSSRREQLTRVSILWLPLAQVVLPERESVVKNCSRFVLVLWLILACILMQSYTASLSSILTINQLQPNYPNANDLRKDPGIIVGYQDGSFVKELLGDPNRLGFEKSRLKNYSGIDEYKDALDKGSRKGGADAIFDEVPYIKVFLKRYGSKNYAMVGPRYRTDGFGFAFAKDSNLTSYFSRAILNVTEGEEIEEIEERYFGTSDDDELQDQYSTSSSDDTTGPSLTSHSFAGGGDDASSCSSIRKKLKVGVPKKSDFKEFVDAESSATNKSQLVKLSGYSIDVFNATVAHLQSVGCNISFEFEAFADDDGNSAGTYDDLLHQIGKGKYDAVVGDVTIVSNRSNYVDFTLPYAESDVKMLVKVGHVPHLNMWIFLAPFSWDLWLSIIIFCIFVGAIIRFMERNNIVVNGDGGVESQRRQRITTVSVFWLPLAQMVIPETFVLAQSYTASLSSILTVDQLKPNYPNVNHLRRHHEINVGYLRDSFVRDLLENPQGLNFENSRLRNYSGIEEYKDALDKGSRKGGVDAIFDEVPYIKVFLNKYGSKNYALVGPKYRTDGFGFAFPTGSKLTSYFSRAILNVTENKEIMDEIERKYFGNNDDDELEDHWNSSSDDTPSFTTYSFAGLFMVVGVLAILGVLVSESIIMWRKYVMLAKTYGQRILLSRTSRNVTQPSVESSRNKSGDIVGSADIEPNIIHPKVRSRSLSSIDIEMLPV 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1311 921 Pfam Ligand-gated ion channel 411 441 IPR001320 GO:0015276|GO:0016020
Sto12g1311 921 SUPERFAMILY Periplasmic binding protein-like II 453 804 - -
Sto12g1311 921 Gene3D - 167 300 - -
Sto12g1311 921 Gene3D - 580 644 - -
Sto12g1311 921 Gene3D - 301 415 - -
Sto12g1311 921 Gene3D - 692 808 - -
Sto12g1311 921 SMART GluR_14 44 411 IPR001320 GO:0015276|GO:0016020
Sto12g1311 921 SMART GluR_14 455 804 IPR001320 GO:0015276|GO:0016020
Sto12g1311 921 SUPERFAMILY Periplasmic binding protein-like II 16 411 - -
Sto12g1311 921 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 443 873 - -
Sto12g1311 921 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 15 441 - -
Sto12g1311 921 CDD GluR_Plant 43 396 - -
Sto12g1311 921 CDD GluR_Plant 454 802 - -
Sto12g1311 921 MobiDBLite consensus disorder prediction 415 445 - -
Sto12g1311 921 Gene3D - 450 579 - -
Sto12g1311 921 Gene3D - 37 166 - -
Sto12g1311 921 Pfam Bacterial extracellular solute-binding proteins, family 3 61 410 IPR001638 -
Sto12g1311 921 Pfam Bacterial extracellular solute-binding proteins, family 3 484 804 IPR001638 -
Sto12g1311 921 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 443 873 - -
Sto12g1311 921 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 15 441 - -
Sto12g1311 921 MobiDBLite consensus disorder prediction 408 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1311 Sto-Chr12 8521944 8533502 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1311 454 846 Ion Channels AT2G29120 38.049 3.28e-61 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1311 K05387 - aip:107641909 442.965