LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto12g1301	ATGCTGTCCAGATCTTGTTTGGACTATTTGAATTTGGTCTCCGTCGATGATTATCAAACGCTGAGTCGGATCCCCAATGTCTCTACCGGGCCGATTCCCACGGCGGAATCCCGGGTTAACGATGCGGATTCCGGGTTTTCTCCGGACGACGTCGTTTCGCCGTGTCCCCAAGAACGCAGGATCATCGTCGCGAATCAGTTGCCTGTGAGGTGTTTCCTCGACGGGAAGACCAAGAAATGGAGTTTCGAATGGGACAGTGATAGTTTGGTGTTACAGCTAAAAGACGGGTTTAACTCCCACGCGGAAGTCATCTACGTGGGTTCTCTGAAAGCCGAAATCGAGCCGCGAGACCAAGAAGAAGTGTCGCAAATCTTGCTCGACAAGTTTCGATGCGTGCCCACGTTCTTGTCCGCGGACATTCACAACAAGTTCTACCATGGATTCTGCAAGCATTACCTCTGGCCTCTGTTTCACTACATGCTGCCCATGTCGTCCGCCCAAAACGCGCGTTTCGACCGTTCGCAATGGCAGGCGTACGTTTCGGCGAACAGGGTTTTCGCCGACAAGGTAACGGAGGTGATCAACCCGGACGAGGATTACGTTTGGGTCCACGATTATCATCTCATGATTCTGCCGACGTTGCTGAGGAAACGGTTCCATCGGGTCAAGCTTGGGTTTTTTCTCCACAGCCCGTTTCCCTCGTCGGAAATCTACCGAACCATTCCGGTTCGGGACGATATTCTTCGGGCTTTGTTGAATTGCGATTTGGTGGGGTTCCAGACTTTTGATTACGCGAGGCATTTCTTGTCGTGTTGTAGCAGAATGTTGGGGTTGGATTATGAGTCCAAAAGGGGTTACATTGGGTTGGATTACTACGGTCGGACCGTGACGATTAAGATCTTGCCGGTTGGGATTCACATGGGTCAGCTCGAGTCTTTATTAGCGTTGCCTCAGACGCGTGATAGGATTGAAGAATTGAGGAAAGTATTCGAGGGGAAAGTTGTGATTTTGGGTGTGGATGATATGGATTTGTTCAAAGGTATAACCTTGAAGTTCTTGGCAATGGGGAAACTTCTGGAAGATCACGAACAGTTAAGAGGCCGAGTGGTGTTAGTTCAGATTCTTAACCCAGCAAGAAGCAGAGGGAAAGACATCCAAGATGTGGAGAACGAGAGCAATTCGATTGCGAAAGAGATCAATGGGAAATACGGGAAACCAGGGTACGACCCAATTGTGTTCATCAACGGCCCTGTTTCAACACAGGAGAAAGCTTCTTACTACGCCATTTCAGAATGCTGCATCGTGAATTGCGTGAGAGATGGTATGAATTTAGTCCCTTATAAGTACACTGTTTGTAGGAACTTCACGGAGAGTCCCAAACAAAAAAGCGTCATCATAGTGTCCGAGTTCATAGGTTGTTCCCCTTCTCTCAGTGGAGCAATCCGAGTGAACCCATGGAACATCGAGGATGTCTCAGAGGCCATGAATTCGGCCATAACAATGAAAGACTCGGAGAAGCAATTACGTCATGAGAAGAATTACAAGTACATAAGCTCCCACGATGTGGGCTTTTGGGGTAGGAGTTTCGATCAGGACTTACAAAGGGCATGTAGAGAGCATTACCTCAAGAGGTGTTGGGAAGTTGGGTTTGGCTTGGGGTTCAGGATCGTTGCTCTTGACCCCACATTCAGGAAGCTCACGGTTCCTTGTGTTTTCCCTGCCTATAGAAACACACAAAACAGATTGATCCTTTTGGACTATGATGGTACCATGATGCCTCAGAATCTAGTGAATAAAAATCCCAGCCAGGAGGTTATTTCTGTCCTGAACTCCCTATGTAGGGACCCCAGAAACTTAGTGTTCATTGTGAGTGGGAGAGACAAGAATTGCCTCACCAAGTGGTTCTCTCCATGTGAAAAATTGGGTCTTTCAGCCGAGCATGGTTTCTTCACTAGGTGGAGTAGGGATAGTCCATGGGAGACGTGTGGATTAGGGATGGACTTTGATTGGAAGAACATTGTAGAGCCAGTGATGGCGCATTACACAGAAGCAACAGATGGTTCCTTCATAGAGCAAAAGGAGAGTGCTTTGGTTTGGCATCACCAAGAAGCTGATCCTCACTTTGGATCTTGTCAGGCAAAAGAGCTTCTTGATCATCTTGAAAGTGTTCTTGCTAATGAACCAGTAATGGTCAAAAGGGGACAGCACATAGTTGAAGTGAATCCCCAGGGTGTGAACAAAGGGATAGTGGTGAGGAACCTAATCTCAAGGATGATGACAAGTAAAGGGAAGGCACCAGATTTTGTGTTGTGCATAGGAGATGATAGGTCAGATGAAGATATGTTTGAGAGCATTGTTGCTTCGGCTTCTGATCCAACACTTCCAGCCATACCAGAAATCTATGCCTGCACTGTGGGTCAGAAGCCAAGTAGGGCCAAATACTATCTAGATGACACTTTTGAAGTCATCAATTTGCTTCAAGGACTAGCCACTTCTGCATTaccatcaccatcaccaccaccaccatag	2529	0.4686	MLSRSCLDYLNLVSVDDYQTLSRIPNVSTGPIPTAESRVNDADSGFSPDDVVSPCPQERRIIVANQLPVRCFLDGKTKKWSFEWDSDSLVLQLKDGFNSHAEVIYVGSLKAEIEPRDQEEVSQILLDKFRCVPTFLSADIHNKFYHGFCKHYLWPLFHYMLPMSSAQNARFDRSQWQAYVSANRVFADKVTEVINPDEDYVWVHDYHLMILPTLLRKRFHRVKLGFFLHSPFPSSEIYRTIPVRDDILRALLNCDLVGFQTFDYARHFLSCCSRMLGLDYESKRGYIGLDYYGRTVTIKILPVGIHMGQLESLLALPQTRDRIEELRKVFEGKVVILGVDDMDLFKGITLKFLAMGKLLEDHEQLRGRVVLVQILNPARSRGKDIQDVENESNSIAKEINGKYGKPGYDPIVFINGPVSTQEKASYYAISECCIVNCVRDGMNLVPYKYTVCRNFTESPKQKSVIIVSEFIGCSPSLSGAIRVNPWNIEDVSEAMNSAITMKDSEKQLRHEKNYKYISSHDVGFWGRSFDQDLQRACREHYLKRCWEVGFGLGFRIVALDPTFRKLTVPCVFPAYRNTQNRLILLDYDGTMMPQNLVNKNPSQEVISVLNSLCRDPRNLVFIVSGRDKNCLTKWFSPCEKLGLSAEHGFFTRWSRDSPWETCGLGMDFDWKNIVEPVMAHYTEATDGSFIEQKESALVWHHQEADPHFGSCQAKELLDHLESVLANEPVMVKRGQHIVEVNPQGVNKGIVVRNLISRMMTSKGKAPDFVLCIGDDRSDEDMFESIVASASDPTLPAIPEIYACTVGQKPSRAKYYLDDTFEVINLLQGLATSALPSPSPPPP	842

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto12g1301	842	CDD	GT20_TPS	59	534	IPR001830	GO:0003824\|GO:0005992
	Sto12g1301	842	Pfam	Glycosyltransferase family 20	59	534	IPR001830	GO:0003824\|GO:0005992
	Sto12g1301	842	Gene3D	Glycogen Phosphorylase B;	54	311	-	-
	Sto12g1301	842	Gene3D	-	580	695	IPR023214	-
	Sto12g1301	842	Gene3D	-	710	834	IPR023214	-
	Sto12g1301	842	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	59	538	-	-
	Sto12g1301	842	TIGRFAM	T6PP: trehalose-phosphatase	580	830	IPR003337	GO:0003824\|GO:0005992
	Sto12g1301	842	Pfam	Trehalose-phosphatase	584	818	IPR003337	GO:0003824\|GO:0005992
	Sto12g1301	842	PANTHER	ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 11-RELATED	1	833	-	-
	Sto12g1301	842	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	582	784	IPR006379	-
	Sto12g1301	842	CDD	HAD_TPP	582	824	-	-
	Sto12g1301	842	Gene3D	Glycogen Phosphorylase B;	312	518	-	-
	Sto12g1301	842	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	1	833	IPR001830	GO:0003824\|GO:0005992
	Sto12g1301	842	SUPERFAMILY	HAD-like	581	829	IPR036412	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto12g1301	Sto-Chr12	8444158	8446867	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto12g1301	1	833	Trehalose Biosynthesis Gene Families	AT2G18700	65.647	0.0	1163

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto12g1301	K16055		-	gmx:100810498	1329.69