Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1300 ATGCCGCCTCCTTCCATTCCCAACCATGCCTCCGCTTCCCTTCAATCCCACCCAAAGCCAAGCCCCAAGCTTCTTTCCCTCGTCCTCAAAGCCATCATCATGACCCTCCTCacctccatcttcttcctcttcctcggCTTCGCTGCCTTCGTCCTCCTCCACCTCTGCTTCATCGGCGGCGTCATCCACCGCCTCCGCTCCCGCCCCACCATCCAGCACGGCCCCTCCTCCGCCGGCATCGCGCCTCGCGACGTAAAGAAGCTCCCCCAATTCCGGGTCTCAGCCGCTACCGAGCCTGGATCCGAAACCCAATGCGTCGTCTGCTTGGATGGCTTCCGGAACGGCCACTGGTGCCGGAAGCTCGCCGGATGTGGCCACGTGTTCCACCGGCGATGTGTGGACATGTGGTTGGTTAAGGTGGCTGCGTGTCCTACGTGCAGGACACCTGTTCGAATAAATGCAGGGGGTTTAGGCCGTCGCCCTCCTCGCCCCAACCCGATTCGAGGCCCGTCACGTCTGGCACGAGTCACGCGAGGACGCCGTATCCCTCCTGCGCATCAAAGCCCTCTTCGCCGTCCCCTGCTTCCTCCTCTCCCTCATCACCGCCGTAGCCGCCGTCCACGCCACCGCGCTCTCCTACAACGGCAAGGTCCCCACCCTGCAATCCGCCGCCGCCGCCCTCAGGCACACCTGGAAGCGCCCTTCCATCACCACCATCTTCATCTACGTCATCCTCCTCGCCTTCGCTCCCTTGCCTCACACATTGCTCGCCCTCGCGCCCTCGCCGGAATTGAGGTTCCTCGTGCTCTCGATCGCGTCGGGAATCGAGGTTTACCTGATGGCGGTGCTGAGCGTGGGCCTGGTGGTGTCGATCGCGGAGGAGAGATTCGGATGGGAGGCGATTCAGGTCGGGTCGGGCTTGATGGAGGGGAGGAGGTTCTGCGGGTGGGTCTTGTCGGGTCTGTTCGTGATGGCTTCGGGTTTGATCCGATGGAGGATGGAGGTGTTGATGGACGGTCCGATTTCGCCATCGGGGATGCTGAAGGCGATGGGATTGGAGGGTAA 1065 0.615 MPPPSIPNHASASLQSHPKPSPKLLSLVLKAIIMTLLTSIFFLFLGFAAFVLLHLCFIGGVIHRLRSRPTIQHGPSSAGIAPRDVKKLPQFRVSAATEPGSETQCVVCLDGFRNGHWCRKLAGCGHVFHRRCVDMWLVKVAACPTCRTPVRINAGGLGRRPPRPNPIRGPSRLARVTRGRRIPPAHQSPLRRPLLPPLPHHRRSRRPRHRALLQRQGPHPAIRRRRPQAHLEAPFHHHHLHLRHPPRLRSLASHIARPRALAGIEVPRALDRVGNRGLPDGGAERGPGGVDRGGEIRMGGDSGRVGLDGGEEVLRVGLVGSVRDGFGFDPMEDGGVDGRSDFAIGDAEGDGIGG 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1300 354 SMART ring_2 105 146 IPR001841 -
Sto12g1300 354 MobiDBLite consensus disorder prediction 180 223 - -
Sto12g1300 354 MobiDBLite consensus disorder prediction 329 354 - -
Sto12g1300 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 154 IPR013083 -
Sto12g1300 354 MobiDBLite consensus disorder prediction 275 305 - -
Sto12g1300 354 Pfam Ring finger domain 104 147 IPR001841 -
Sto12g1300 354 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Sto12g1300 354 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 9 154 - -
Sto12g1300 354 MobiDBLite consensus disorder prediction 196 223 - -
Sto12g1300 354 SUPERFAMILY RING/U-box 100 153 - -
Sto12g1300 354 PANTHER RING-H2 FINGER PROTEIN ATL56 9 154 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1300 19 152 C3H Transcription Factor Family AT2G18670 48.905 1.27e-30 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1300 - - gmx:102670430 184.496