Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1299 ATGAATCGCTTTCTCCAATCTTCCAATTCTCCCTCCCCCGCCGTCAGTCCCGGCgtcctcctcctcatcatcatccTCGCCGTCGTCTTCTTCCTCTCCGGCCTCCTCCACCTCCTCCTCCGCTTCCTCTGGCGTTCCCACCCCCCTCCAGACCCCCACGACCTCCACGTCACCGCCCTCCAGGGCCAATTGCAGCATCTCTTCCACCTCCACGACTCCGGCGTCGACCAATCCTTCATCGACACCCTCCCCGTCTTCCCCTTCAGCGCCATCATCGGCCTCCATCTCAAAACCCCCTCCTTCGATTGCGCCGTCTGCCTCTGCGAATTCCAACCCCACGACAAGCTCCGATTGCTCCCCAATTGCAGCCACGCCTTCCACGTGGACTGCATCGACACATGGCTCCTCTCTCACTCCACCTGCCCACTCTGCCGCTCCACTCTGCTCCACCACGATCCCCTGTTTTCTCGACCCCCCATCGTCCTCGTTCTCGAATCTGGGAGCGACACTTCCGCAGAGATTGTtccacaacaacaacaacaagagCCCGCATCCGTATCCGGATCCGGATCAGAATCAGTATCCGGGTCTGCCCGGTTGGATGCGGGTGAAGCGGTCACGGTGAAGCTCGGGAAGTTCACGAATGTGGATGGCGATGGTGGAGGTTGTAGTGAGAATGGGGAAGCGAGGAGGTGTTTTTCGATGGGGTCGTTTGCTTATGTGATGGACGAGAATTCTTCGCTTCGAGTACTACCCATTAGAGGCAAGATACGAAAAAAGCAAGCTTTTCCATTATTAACGCCGGGCCACAGGGCCGCCAGGTCGGAATGTGACTGCGAGTCGAGGAGGGAATTGGGATTTTCTGGGGTTGTGAGCAGAAGGGAGAGCTTTTCGGTGTCTAAGATATGGCTTCGAGGGAAggaggaagagaaggaagagaagcaGAGTGATGATGAGATGGGTGGGGGTTCGTTGTCGTCGGCGAGGAGGGCGGTGTCGTTTCGATTGCCGTTGCAGAGTGGAAACGGCGACGAGAATTTGAGAGGGAAATTGGAGGCGAGAAGTGCGATATCGGAGGGAAATCGGAGTTGTTATAGTTTGGAAGAGTCGTGGCggcaggaggaggaggaggaggaggtgagaGGGCCGTCGTTTGCGAGGAGGACTCTGCTTTGGCTGACGGGAAAACAGAGCAAGAGTGCGAGTACTGGTCCTTCTCTGTAA 1224 0.527 MNRFLQSSNSPSPAVSPGVLLLIIILAVVFFLSGLLHLLLRFLWRSHPPPDPHDLHVTALQGQLQHLFHLHDSGVDQSFIDTLPVFPFSAIIGLHLKTPSFDCAVCLCEFQPHDKLRLLPNCSHAFHVDCIDTWLLSHSTCPLCRSTLLHHDPLFSRPPIVLVLESGSDTSAEIVPQQQQQEPASVSGSGSESVSGSARLDAGEAVTVKLGKFTNVDGDGGGCSENGEARRCFSMGSFAYVMDENSSLRVLPIRGKIRKKQAFPLLTPGHRAARSECDCESRRELGFSGVVSRRESFSVSKIWLRGKEEEKEEKQSDDEMGGGSLSSARRAVSFRLPLQSGNGDENLRGKLEARSAISEGNRSCYSLEESWRQEEEEEEVRGPSFARRTLLWLTGKQSKSASTGPSL 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1299 407 MobiDBLite consensus disorder prediction 172 199 - -
Sto12g1299 407 SUPERFAMILY RING/U-box 99 153 - -
Sto12g1299 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 149 IPR013083 -
Sto12g1299 407 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Sto12g1299 407 CDD RING-H2_PA-TM-RING 102 145 - -
Sto12g1299 407 Pfam Ring finger domain 102 145 IPR001841 -
Sto12g1299 407 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 12 325 - -
Sto12g1299 407 MobiDBLite consensus disorder prediction 172 196 - -
Sto12g1299 407 MobiDBLite consensus disorder prediction 359 383 - -
Sto12g1299 407 SMART ring_2 103 144 IPR001841 -
Sto12g1299 407 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 12 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1299 Sto-Chr12 8415898 8420192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1299 34 399 C3H Transcription Factor Family AT2G18650 43.000 2.11e-82 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1299 - - lja:Lj4g3v2023880.1 350.517