Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1281 ATGCCAGATTTAGGACATTTATCGCTCTCAGCTACTCTCGCGCTGTCTGATTGCCCTAACCTGAATGCCCCTTCTGAGCCATCtgatctgaccggttctttgtaCCCAGTCCCAGTCAAAACCCTAGGTAATGGTTGCATTTCCGACCACACTTTGCTATTACCGGCTCTTCAGCCGGATGAGGCCCACAATGGAAatgaatttagggtttcgaagcGGAGCCGTGGTTCTTTGAATCGAGTCAAGAAGGCGGTCGATGACAAGGGTTTAGAGGATCACGCGAAAGATTGTTCTGAAAAGAAGATGGATTCGGGGATTTCTAGGCTGGGTAGCACTCTTCCATTTCTTGTCGGTGCTCCGAAGATGGCTGAATGTCTTTTTTGTCATCATTTTGTCGACCCCGGGAAGGAGATTTTATGTTCTGTCCGTGGCTGTGAAAGAGTCTACCATATAGAATGTGCAAAAGAAGCTGTGGGGGTGTCAAATGTCAAAAAATTCAAGTGCCCACAACATGTATGTTTTATTTGCAAACAAAAATTACACTCGCGGTGTGAGAGGTGCACTATGGCATTTCATGTTAAATGTGCACCGTGGCCGGATGCTGTGATGCCTTTAAAGGATCATCCTGGACGAGCTGTTTGTTGGAGACATCCTAATGACTGGCGGTTGGATAGGAagGAAGTGTTTTCCCGTTTGCCTCTGCCCTATGTGGATGAGGAGTTCAAGATTGATTTCATGTGGAAAGACATGGAGAGTAAGATTGAGCCACCTCCATATGTACACATAAAACGCAATGTATACCTGGTGAAGAAGAAGCGCAGTTATGCAGATGATGGTGCAGGTTGCACCAGTTGCAGTTTTTCATCTACATGCTCTGATGATTGTGTGTGCAGaGTTCAATGCATAAGCTGCTCTAAGGCTTGTCGCTGCTCAGAAAATTGCAATAATCGGCCATTTCGCAAGGAGAAGAAGATCAAGATTGTCAAGACTGAACTTTGTGGTTGGGGAGTAGAGGCTGCTGAAACCATCAATAAAGGCGAATTTATAATTGAGTATATTGGAGAAGTAATAGATGACGCTTTGTGTGAAAAAAGGCTTTGGGACATGAAATACAGAGAtgaacataatttttatatgtgtGAGATTAGGAAAGACTTCACAATAGATGCAACGTTCAAAGGAAATACTTCACGCTTTTTAAACCATAGTTGTGATCCCAATTGTGTCTTGGAGAAGTGGCAAGTTGATGGTGAAACACGTGTAGGTGTCTTTGCTGCCCGGCCAATAGAAGCTGGAGAACCATTAACATACGATTATAGATTTGTGCAATTTGGACCAGAGGTAAAATGCCACTGCGGTGCTCCAAATTGTCAAGGCTTTCTAGGGACCAAAAAGAAGATTGACAAGGTGAACCTTTGCTGGGGCTCAAAACGGAAGAGAACTTCCGCTTCTTGCGCTGCCATAGCAACAGCCGTATGA 1479 0.4287 MPDLGHLSLSATLALSDCPNLNAPSEPSDLTGSLYPVPVKTLGNGCISDHTLLLPALQPDEAHNGNEFRVSKRSRGSLNRVKKAVDDKGLEDHAKDCSEKKMDSGISRLGSTLPFLVGAPKMAECLFCHHFVDPGKEILCSVRGCERVYHIECAKEAVGVSNVKKFKCPQHVCFICKQKLHSRCERCTMAFHVKCAPWPDAVMPLKDHPGRAVCWRHPNDWRLDRKEVFSRLPLPYVDEEFKIDFMWKDMESKIEPPPYVHIKRNVYLVKKKRSYADDGAGCTSCSFSSTCSDDCVCRVQCISCSKACRCSENCNNRPFRKEKKIKIVKTELCGWGVEAAETINKGEFIIEYIGEVIDDALCEKRLWDMKYRDEHNFYMCEIRKDFTIDATFKGNTSRFLNHSCDPNCVLEKWQVDGETRVGVFAARPIEAGEPLTYDYRFVQFGPEVKCHCGAPNCQGFLGTKKKIDKVNLCWGSKRKRTSASCAAIATAV 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1281 492 Pfam SET domain 334 439 IPR001214 GO:0005515
Sto12g1281 492 ProSiteProfiles SET domain profile. 323 440 IPR001214 GO:0005515
Sto12g1281 492 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR3 61 490 - -
Sto12g1281 492 SMART PHD_3 173 218 IPR001965 -
Sto12g1281 492 SMART PHD_3 124 172 IPR001965 -
Sto12g1281 492 CDD SET_ASHR3-like 324 462 - -
Sto12g1281 492 ProSiteProfiles Post-SET domain profile. 446 462 IPR003616 -
Sto12g1281 492 ProSiteProfiles AWS domain profile. 277 323 IPR006560 GO:0005634|GO:0018024
Sto12g1281 492 SMART set_7 323 446 IPR001214 GO:0005515
Sto12g1281 492 PANTHER SET DOMAIN PROTEINS 61 490 - -
Sto12g1281 492 SUPERFAMILY FYVE/PHD zinc finger 121 180 IPR011011 -
Sto12g1281 492 Gene3D SET domain 237 481 IPR046341 -
Sto12g1281 492 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 491 IPR025787 -
Sto12g1281 492 SUPERFAMILY SET domain 247 459 IPR046341 -
Sto12g1281 492 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 220 IPR013083 -
Sto12g1281 492 SMART PostSET_3 446 462 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1281 Sto-Chr12 8257250 8262025 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1281 304 461 C2H2 Transcription Factor Family AT2G23740 36.872 8.17e-25 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sto12g1281 SET 5.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1281 - - jre:108989501 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1281 12 8257250 8262025 Sto12g1281 12 8257250 8262025 ECH