Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1279 ATGGCGAAACTATCACAGCAAACCCAGAAAAGcaagaacaataataataacCTTAAGGCAACAAATTCTAGTACTGTTGCTAGTAGTACCATGAAGCCCAAGGTGAAACGAACAAGGAGAAGTGTGCCTAGAGATTCACCTCCTCAACGACGATATGAAGCTCATTTGTGGGACAAAAATTGCTGGAATGAGTCTCAGAACAAGAAAGGACGACAAGgTGCTTATGATGATGAGGAGGCTGCAGCTCATGCTTATGATTTAGCAGCATTGAAATACTGGGGTCAAGACACCATTCTTAACTTTCCGTTAGTGACCTATTTGAACGAGATCAAAGAAATGGAGGGTCAATCGAGGGAAGAGTATATCGGATCATTAAGGAGgCATCATCATAATGGAAGATGGGAAGCTCGCATTGGTAGAGTTTTTGGCAACAAATATCTTTATCTTGGGACTTATGCTACCCAAGAAGAAGCTGCCACTGCATATGATATGGCGGCGATTGAATACCGTGGCCTTAATGCCGTCACTAATTTTGACCTAAGCCGTTATATTAAGTGGCTTAAACCCAAAAATGTTAACAAcgatattaatttaattaacacTAATATTCTTGGTGAGTCTAACAATAACCCTAATTGTGACACCAATTTCACCTCACCAAACCCTAATTATGAAGAACAAGGATTCAATTTCTTCCACGATTCATTTAATAGTGGGAAAGAAACAGTTTTGACTACTCAATCACGACCGACGACGACGACGGCCACGTCAGCCCTAGGGCTTCTGCTCCAGTCATCTAAGTTCAAGGAGATGATGGAGATGGCATCTACCGGTGATGACATGCCGTCGCCGGCGACACCACCGTGCAGGTTCCCGGAAGACATCCAGACCTACTTTGAGTGTGAAGACTCCAATGGAGATGTTGGGGAAGGGGATGATGATGGTACCATGTTTAGTGAGATCAATACTTTTGTTCCTCCTTTGTTCCATTATGATgatcaatttgagattttgaagTGCTAA 1023 0.4066 MAKLSQQTQKSKNNNNNLKATNSSTVASSTMKPKVKRTRRSVPRDSPPQRRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAAHAYDLAALKYWGQDTILNFPLVTYLNEIKEMEGQSREEYIGSLRRHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPKNVNNDINLINTNILGESNNNPNCDTNFTSPNPNYEEQGFNFFHDSFNSGKETVLTTQSRPTTTTATSALGLLLQSSKFKEMMEMASTGDDMPSPATPPCRFPEDIQTYFECEDSNGDVGEGDDDGTMFSEINTFVPPLFHYDDQFEILKC 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1279 340 CDD AP2 127 181 IPR001471 GO:0003700|GO:0006355
Sto12g1279 340 Coils Coil 1 21 - -
Sto12g1279 340 Gene3D AP2/ERF domain 120 181 IPR036955 GO:0003700|GO:0006355
Sto12g1279 340 Gene3D AP2/ERF domain 40 104 IPR036955 GO:0003700|GO:0006355
Sto12g1279 340 SMART rav1_2 127 185 IPR001471 GO:0003700|GO:0006355
Sto12g1279 340 SMART rav1_2 48 108 IPR001471 GO:0003700|GO:0006355
Sto12g1279 340 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 317 - -
Sto12g1279 340 MobiDBLite consensus disorder prediction 1 51 - -
Sto12g1279 340 ProSiteProfiles AP2/ERF domain profile. 120 179 IPR001471 GO:0003700|GO:0006355
Sto12g1279 340 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1 317 - -
Sto12g1279 340 SUPERFAMILY DNA-binding domain 48 103 IPR016177 GO:0003677
Sto12g1279 340 MobiDBLite consensus disorder prediction 1 32 - -
Sto12g1279 340 Pfam AP2 domain 126 171 IPR001471 GO:0003700|GO:0006355
Sto12g1279 340 ProSiteProfiles AP2/ERF domain profile. 38 102 IPR001471 GO:0003700|GO:0006355
Sto12g1279 340 SUPERFAMILY DNA-binding domain 121 181 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1279 Sto-Chr12 8248576 8251161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1279 51 285 AP2-EREBP Transcription Factor Family AT5G57390 41.912 1.42e-56 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto12g1279 AP2 2.7e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1279 K09285 - gmx:100804555 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1198 3 8633020 8635004 Sto12g1279 12 8248576 8251161 CCT
Sto12g1279 12 8248576 8251161 Sto12g1279 12 8248576 8251161 ECH