Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1258 ATGTCAGGGATTGTCTCAGACCCAGGAAACTCTCTAGCGACTTGGAGGTCTCCTGGTGTTCATGTTTGTGATTGGTCAGGAATAAGATGTAACAATGTAAGTGGCAGAATCGTAGAGATTGCTCTTAGTGGAAAATCACTAGGAGGTACAATTTCCCCTGCTCTTGGTAACCTCTCTGCTCTGGAAATTCTTGATCTTTCTGGGAATTTTTTTGTGGGTCACATTCCAAAAGAGTTGGGATGTTTAGTGCAGCTTGGGCAACTCAGTTTGTCTTGGAATCTTCTTGAAGGGAAGATTCCCTCTGAGATGGGTTCACTTCACAACTTGTACTACCTTGACATGGGAAGTAATAGGCTTGAGGGACAAGTTCCTTTAGCTCTTTCAAACTCTACACAACTTAAATGGCTAGACTTGGGGTCTAACATGTTGAGTGGAGAGCTGCCATCTAAGATCATAGGTAATTGGCCAGAATTGCAATACCTTTACTTATCCTATAATGGCTTTGTCAGCCATGATGGTAACACCAACCTTGAACCTTTCTTTGCTTCCTTAGTGAATTTGTCTAACCTCGAAGAACTCAAATTAGCCGGAAACAACCTTGGTGGGAAGTTAACTCATGTGATTGGAGGTCTTCCCAAAAGTTTAGTACAGCTTCACCTTGATGACAATCTCATTTATGGCTCCATTCCCCCACACATTTCCAACCTTGTTAATCTGACTCTATTAAATTTATCCAGTAACCATCTGAATGGACGAATCCCTCCTAGTCTATGCCAGATGGGTAGGCTAGAGAGAGTTTATTTGTCAAATAATTCACTTTCTGGTGAGATTCCTTCAACTCTTGGTCGCATTCAACATCTGGGTCTTCTAGATTTGTCAAGAAACAAGCTTTCTGGTTCAATACCAGATAGTTTTGCTGATCTTTCTCAGTTAAGAAGGCTTTTACTTTATGACAACCAGCTTTCTGGAACAATACCTCCAAGCCTGGGAAAATGTGTTAATCTGGAGATTCTAGACCTATCTCACAACAAGATTTCAGGGATGATTCCTTCAGAAGTTGCAGCCTTATCTAGCTTGAAATTATACTTAAATTTGTCAAGCAATAACTTAGATGGGCCTTTACCATTGGAGCTCAGTAAAATGGACATGGTTCTAGCTATTGATCTATCCATGAACAATCTCTCTGGAAGAATCCCACCACAGCTTGAAAGTTGCATAGCACTTGAGTACCTTAACCTTTCGGGTAATTCCTTGGAAGGACCTCTTCCATATTCTTTAGGCCAACTGCCTTACATTCGTGCACTTGATGTGTCTTCGAACCGATTCACCGGGGAAATACCTCAGTCCTTGCAGTTATCTTCCACTCTCAAAAAACTTAACTTCTCTTTCAACAAATTCTCAGGGAAAGTATCAAATGAGGGTGCATTTTCATCTCTCACCTTAGACTCTTTCCTAGGAAATGATGGTCTTTGTGGCTCAATACAAGGCCTGCAGAGCTGTCATAAGAAACATAACCATCATTTGGTTTTCTTAACAATTCTGGTGTTACTCTTTGGAATCCCCATTTTATGCATATTCGGGTTCACGTCAGAAGTCCGAAGGAGACTAGCTATTGCTAGCAAAGGAGACTTGGAAGATGATGAAGAGGAAACAAAAGAGCTCAATTTCCCAAGAATTTCCTACAGTCAACTTATTGAAGCCACTGGGGGCTTCAGTGCTTCAAGCTTAATCGGTTCAGGCCGGTTCGGACAGGTCTACAAGGGAGTCCTCCGAGACAATAAAAGAATAGCCGTGAAAGTATTAGATACTACCAAAGCTAGTGATATTTCAGGGAGCTTCAAAAGGGAATGTCAGATCCTGAAGAGGACTAGGCAcagaaatttaataaaaatcatCACAATATGCAGCAAGCCACAGTTTAAGGCTCTTGTTCTTCCATTGATGCCGAATGGCAGCCTCGAGAGGCACCTATATCCAAGCCATGGGTTAAGCCAGAAGTTGGATTTGGTTCAATTAGTGAGGATTTGCAGTGATGTAGCTGAGGGAATGGCCTATCTTCACCATTACTCTCCAATTAGAGTAGTGCATTGTGATCTTAAGCCAAGCAATATACTTCTTGATGATGATATGACTGCTTTGGTAACAGATTTTGGAATTTCAAGGCTTGTGAAAGGTGATGATCAGAGTAAGTCCCCCAATATATCAGCATCTTTCAGTTCAACAAAAGACTTGTTATGTGGCTCTATTGGCTATATAGCCCCTGAATATGGAATGGGAAAACATGCATCAACTCAAGGTGATGTGTACAGTTTTGGAGTATTTGTGTTAGAAATAGTGACAGGTAGGCCCCCCACAGATGTCCTTATCCATGAAGGTTATAGCTTGCATGAATGGGTTAAGAGACAATATCCACACAAGCTTGAAAGCATAGTGAAGGGAGCCTTGGAAAGATGCTCTTCTCCTTTAAGCCTCATGTCAGTGAAATATGACAGAATTTGGAAAGATGTTATAATGGAACTGATAGAGTTAGGGCTTATTTGCACACAGAACAATCCTTCAATAAGACCAAGCATGGTGGATGTAGCTCAAGAGATTGGGAGGTTGAAAGATTATTTGTGTAATCCATCCCTTGATCTTGTGGTTGAGGAAGGTAATCCCAAGGATGATTCTTTCTGTGGTTGGAAAGTCAATAATTGA 2697 0.4105 MSGIVSDPGNSLATWRSPGVHVCDWSGIRCNNVSGRIVEIALSGKSLGGTISPALGNLSALEILDLSGNFFVGHIPKELGCLVQLGQLSLSWNLLEGKIPSEMGSLHNLYYLDMGSNRLEGQVPLALSNSTQLKWLDLGSNMLSGELPSKIIGNWPELQYLYLSYNGFVSHDGNTNLEPFFASLVNLSNLEELKLAGNNLGGKLTHVIGGLPKSLVQLHLDDNLIYGSIPPHISNLVNLTLLNLSSNHLNGRIPPSLCQMGRLERVYLSNNSLSGEIPSTLGRIQHLGLLDLSRNKLSGSIPDSFADLSQLRRLLLYDNQLSGTIPPSLGKCVNLEILDLSHNKISGMIPSEVAALSSLKLYLNLSSNNLDGPLPLELSKMDMVLAIDLSMNNLSGRIPPQLESCIALEYLNLSGNSLEGPLPYSLGQLPYIRALDVSSNRFTGEIPQSLQLSSTLKKLNFSFNKFSGKVSNEGAFSSLTLDSFLGNDGLCGSIQGLQSCHKKHNHHLVFLTILVLLFGIPILCIFGFTSEVRRRLAIASKGDLEDDEEETKELNFPRISYSQLIEATGGFSASSLIGSGRFGQVYKGVLRDNKRIAVKVLDTTKASDISGSFKRECQILKRTRHRNLIKIITICSKPQFKALVLPLMPNGSLERHLYPSHGLSQKLDLVQLVRICSDVAEGMAYLHHYSPIRVVHCDLKPSNILLDDDMTALVTDFGISRLVKGDDQSKSPNISASFSSTKDLLCGSIGYIAPEYGMGKHASTQGDVYSFGVFVLEIVTGRPPTDVLIHEGYSLHEWVKRQYPHKLESIVKGALERCSSPLSLMSVKYDRIWKDVIMELIELGLICTQNNPSIRPSMVDVAQEIGRLKDYLCNPSLDLVVEEGNPKDDSFCGWKVNN 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1258 898 ProSiteProfiles Leucine-rich repeat profile. 334 355 IPR001611 GO:0005515
Sto12g1258 898 CDD STKc_IRAK 577 868 - -
Sto12g1258 898 Pfam Leucine rich repeat 262 321 IPR001611 GO:0005515
Sto12g1258 898 SUPERFAMILY L domain-like 234 492 - -
Sto12g1258 898 Gene3D Ribonuclease Inhibitor 2 172 IPR032675 -
Sto12g1258 898 PANTHER LEUCINE-RICH RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN 106 869 - -
Sto12g1258 898 PANTHER LEUCINE-RICH RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN 1 125 - -
Sto12g1258 898 Pfam Leucine Rich Repeat 408 427 IPR001611 GO:0005515
Sto12g1258 898 Pfam Leucine Rich Repeat 238 258 IPR001611 GO:0005515
Sto12g1258 898 SMART serkin_6 571 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto12g1258 898 Gene3D Phosphorylase Kinase; domain 1 542 646 - -
Sto12g1258 898 Gene3D Ribonuclease Inhibitor 173 504 IPR032675 -
Sto12g1258 898 SUPERFAMILY Protein kinase-like (PK-like) 552 863 IPR011009 -
Sto12g1258 898 Gene3D Transferase(Phosphotransferase) domain 1 648 875 - -
Sto12g1258 898 ProSiteProfiles Protein kinase domain profile. 571 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto12g1258 898 SUPERFAMILY L domain-like 3 250 - -
Sto12g1258 898 ProSitePatterns Protein kinases ATP-binding region signature. 577 599 IPR017441 GO:0005524
Sto12g1258 898 Pfam Protein kinase domain 573 861 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto12g1258 898 PANTHER OS04G0122200 PROTEIN 1 125 - -
Sto12g1258 898 PANTHER OS04G0122200 PROTEIN 106 869 - -
Sto12g1258 898 SMART LRR_typ_2 333 356 IPR003591 -
Sto12g1258 898 SMART LRR_typ_2 284 307 IPR003591 -
Sto12g1258 898 SMART LRR_typ_2 308 332 IPR003591 -
Sto12g1258 898 SMART LRR_typ_2 236 260 IPR003591 -
Sto12g1258 898 SMART LRR_typ_2 58 82 IPR003591 -
Sto12g1258 898 SMART LRR_typ_2 106 129 IPR003591 -
Sto12g1258 898 SMART LRR_typ_2 187 211 IPR003591 -
Sto12g1258 898 ProSitePatterns Serine/Threonine protein kinases active-site signature. 694 706 IPR008271 GO:0004672|GO:0006468
Sto12g1258 898 Pfam Leucine Rich repeat 332 346 IPR001611 GO:0005515
Sto12g1258 898 Pfam Leucine rich repeat N-terminal domain 3 31 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1258 Sto-Chr12 8069709 8073478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1258 2 876 Receptor kinase-like Gene Family AT3G47570 33.400 1.59e-145 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Sto12g1258 Pkinase 8.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1258 - - lang:109346572 1223.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1258 12 8069709 8073478 Sto12g1258 12 8069709 8073478 ECH