Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1225 ATGTCGAAGGAAGGTGATCATGAGAAGGCAACATCGAGCTCAAACAACAACGCTAATGGTGGATGGACCCTCCAGAACTCCGATCAACCGGGTATGTCTCTGGTTGTTTCACAACTAACTGGGTCCAATTATCTTTCTTGGAGTCTGGCGGTGAAAACTGCACTAGAAGCGAAAGATAAGTTGGGATTTGTAGACGGGACTATCAAACCACCTGAGGATGCTGCTCAGTTTAAGAAGTGGAAGCCCGTTGATTCAATGGTCAAATCGTGGCTCACTAATTCCCTCACCAAAGAACTATCCAAGAGCTTTGTTTTCTGCAATACTGCAAAGGAGCTCTGGGATTGCATTGCTGAAAGATATTCAGTTAACAATGGCCCGAAGTTTTACCAAATTCAGAGACAAACTGTTTCTCTGGAGCAAGGATCAGAATCAGTCACAGGAGGACAGATTATGAATCTTGATCCTCTACCAAGCGTGAACAAAGCTTTCTCCATGGTGGTGAGGCAAGAGACACAGAAAGAGGTAAATCTTGCTTTCAACAATGTTGAAAGCTCAGCTATGCTCGCAAGAGCAGGAAACAACAGAAGGACAGATGACAAGAAGGCTGACAAGAACAACTGGTATAAAGAGCTTAAAGAACAGAAGAAGAAAGCAGGGAAAAGGAATGCAGCAGCCAATGCAGTTGCAGACACACCTGTGGAATACCTCAAAGACAAGGAGAATATTGATCTTGCAGGTGTCTTGACAGCCCTACAAGAGATAACCAAGATGGTTAAGCACAAAGCTGAAGAACATGTGAATTTTGCAAACCTTGGAGAGTTTGCAGAACAGGTGGAGGAATCTACTCCAGTGGACATCCCAAGAGAAAGAACTGTGACAGAAAGGAGAGAGGGACAGCAAGCTGATAATGATGTAGCAGCATATGATGAGCCTTTTAATAACACAGAATCAACAGATAATCTAGAGTTAGATGATCTACAAAGTGACATACAGATAGAAGAGGAGATGGAAGGGAATAGTGAAGCTGAGTTGATAcaacaagaagaagagcaaCAAAATATACACTTACAAGAGGAGCACAAACCTGCTTCACTATTTGCCAGCACTACACATTCTCTCAGCAAAAGATTGAAGGGCATTGTGCCACAGCAGAATGGGAATTGGGGAGCACAGATCTATGCAAACAACCACCGTGTCTGGCTGGGGACCTTCAAGACCCAGAAGGAAGCAGCCATGGCCTATGACAGCGCGGCCATCCGCCTGCGTCGCGCCGGTGATTCCCACCGGAACTTCCCTTGGACTAGCATCAACGTTGAGGAGCCAAGGCAGATACTCTTCCGGAAGAAGCTGACACCCAGTGACGTGGGGAAGCTGAACAGGATTGTGATCCCAAAGAAAGATGCCACCACTTGCTTCCCTGAGGTTTCCCGGAGAGTGGAGGAAGATGCCGAGGCCGGGGTGGTCTCGGAGGCGCAGATGGACTTCTTTGACGGGACGATGAGGTGCTGGAGGTTCCGGTATTGCTACTGGAGGAGCAGCCAGAGCTTTGTGTTCACAAGGGGGTGGAGCAGGTTTGTGAAGGATAAGAATTTGGAAGCTGATGATGTTGTGGCATTTTACTTGTGTGAGTTCAAAGAGGAGGAAGCAGGAGGCAAAATGCTCAAGAAATTCTTCATGATTGACACTTTTAGGGATCAAgatagcagcagcagcagctcaCTGATTGAAGAGCAAATCATGGAAGAAACTCATCACCCATCATCATGCTTGCTTGATGAGAGGAAAGGTTTTAAACTCTTTGGAGTTCAAATCAATTGA 1818 0.4505 MSKEGDHEKATSSSNNNANGGWTLQNSDQPGMSLVVSQLTGSNYLSWSLAVKTALEAKDKLGFVDGTIKPPEDAAQFKKWKPVDSMVKSWLTNSLTKELSKSFVFCNTAKELWDCIAERYSVNNGPKFYQIQRQTVSLEQGSESVTGGQIMNLDPLPSVNKAFSMVVRQETQKEVNLAFNNVESSAMLARAGNNRRTDDKKADKNNWYKELKEQKKKAGKRNAAANAVADTPVEYLKDKENIDLAGVLTALQEITKMVKHKAEEHVNFANLGEFAEQVEESTPVDIPRERTVTERREGQQADNDVAAYDEPFNNTESTDNLELDDLQSDIQIEEEMEGNSEAELIQQEEEQQNIHLQEEHKPASLFASTTHSLSKRLKGIVPQQNGNWGAQIYANNHRVWLGTFKTQKEAAMAYDSAAIRLRRAGDSHRNFPWTSINVEEPRQILFRKKLTPSDVGKLNRIVIPKKDATTCFPEVSRRVEEDAEAGVVSEAQMDFFDGTMRCWRFRYCYWRSSQSFVFTRGWSRFVKDKNLEADDVVAFYLCEFKEEEAGGKMLKKFFMIDTFRDQDSSSSSSLIEEQIMEETHHPSSCLLDERKGFKLFGVQIN 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1225 605 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 346 442 - -
Sto12g1225 605 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 444 581 - -
Sto12g1225 605 Coils Coil 339 359 - -
Sto12g1225 605 Pfam B3 DNA binding domain 446 543 IPR003340 GO:0003677
Sto12g1225 605 Pfam AP2 domain 386 423 IPR001471 GO:0003700|GO:0006355
Sto12g1225 605 Gene3D AP2/ERF domain 376 433 IPR036955 GO:0003700|GO:0006355
Sto12g1225 605 ProSiteProfiles AP2/ERF domain profile. 376 432 IPR001471 GO:0003700|GO:0006355
Sto12g1225 605 SUPERFAMILY DNA-binding pseudobarrel domain 441 544 IPR015300 -
Sto12g1225 605 MobiDBLite consensus disorder prediction 1 24 - -
Sto12g1225 605 CDD AP2 375 434 IPR001471 GO:0003700|GO:0006355
Sto12g1225 605 Coils Coil 208 228 - -
Sto12g1225 605 SMART B3_2 446 560 IPR003340 GO:0003677
Sto12g1225 605 ProSiteProfiles B3 DNA-binding domain profile. 446 561 IPR003340 GO:0003677
Sto12g1225 605 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 346 442 IPR044800 GO:0003700
Sto12g1225 605 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 444 581 IPR044800 GO:0003700
Sto12g1225 605 SUPERFAMILY DNA-binding domain 377 433 IPR016177 GO:0003677
Sto12g1225 605 Pfam gag-polypeptide of LTR copia-type 26 71 IPR029472 -
Sto12g1225 605 SMART rav1_2 376 438 IPR001471 GO:0003700|GO:0006355
Sto12g1225 605 CDD B3_DNA 445 541 IPR003340 GO:0003677
Sto12g1225 605 Gene3D - 441 567 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1225 Sto-Chr12 7816532 7834234 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1225 376 604 RAV Transcription Factor Family AT1G50680 39.550 4.99e-61 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Sto12g1225 B3 9e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1225 K09287 - fve:101310399 230.72