Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1224 ATGGCAGCTGGAAATGGGGTTTTTGCAGAGATTTTGGATGGAGAGGTGTACAAGTACTACTCTGATGGCGAGTGGAAGAAATCTTCTTCTGCCAAAACTGTTCCCATCATCAATCCCACTACCAGGAAGACCCAGTACAAAGTTCAGGCAAAATCTGCACAGAAGTCATGGGCAAAGACTCCACTATGGAAGCGAGCCGAACTTCTTCACAAGGCAGCTGGAATTCTTAAAGATCACAAAGCTCCAATTGCAGAGTGTCTTGTCAAAGAAATTGCAAAGCCATCTAAAGATGCTGTTACAGAGgtccatatatattttttgtttcttctgCTTAATTTCTGGATTCCATTGGGAGTGGTTTTGGCCATTCCACCATTCAACTATCCAGTAAATCTTGCTGTTTCAAAAATTGCTCCTGCACTGATTGCTGGAAATTCACTTGTGCTCAAACCTCCTACTCAGGGAGCTGTTTCTGCTCTGCATATGGTGCATTGCTTTCACTTGGCTGGTTTTCCCAAAGGCCTAATCAGCTGTGTCACTGGAAAAGGCTCTGAGATTGGCGACTTCCTTACGATGCATCCGGGAGTGAACTGTATAAGCTTCACTGGTGGAGATACTGGCATTGCAATTTCAAAAAAGGCCGGCATGATCCCTCTGCAAATGGAGTTGGGAGGAAAAGATGCTTGCATTGTACTTGAGGATGCTGACCTTGATTTGGTGGCTGCAAACATTATAAAAGGAGGATTCTCATACAGTGGTCAGAGGTGCACTGCTGTTAAGGTTGTCCTAGTGATGGAATCTGTTGCTGCTGCTTTGGTGGAGAAAGTGAAGGCTAAAGTGGCAAAACTGACTGTTGGGCCACCTGAGGATGACTGTGACATCACTCCGGTTGTGTCAGAGTCATCGGCGAACTTCATTGAAGGCCTTGTCATGGATGCGAAACTGAAAGGAGCAACATTCTGCCAGGAGTACAAGAGAGAGGGAAACCTCATTTGGCCCTTGCTTCTGGACAATGTGAGGCCTGATATGAGAATTGCATGGGAGGAGCCATTTGGACCAGTTTTACCAGTCATTAGGATCAATTCAGTTGAAGAAGGAATCCACCATTGCAATGCCAGCAATTTTGGACTTCAGGGTTGTGTCTTCACAAGGGATGTCAACAAAGCAATGTTGATCAGTGATGCAATGGAAACAGGAACAGTTCAGATAAACTCAGCCCCGGCCCGTGGACCTGATCATTTCCCCTTCCAGGGTATCAAGGACAGTGGAATTGGATCACAAGGGATTACCAACAGCATAAACATGATGACCAAGATCAAGACAACTCCAAGCAGCAGCACAGAAATGCAACAACCAGGAATTAACTCTCTCTTCAACTCTTCTCAAATCCCTCTTCATCAGGACCTTCACAACTCCACCTCCCACCAGATCCATCATCCCTCTCATCAGATGCAGTCGGACCACCTTCACGACGATTTCCTCGACCAAATTCTCTCCAACCTTCCTTCTTGCTCCTGGCAGGACCTCGCCCCCAAGCCCTTGTGGGACCTCAATCCCTCCCCCGCCGATAATAATAATGCTGCCGCCTTCCACTCCCTCGACGACCAAGCCAACTTGGCCTCCAAGTTCCGCAACCACCAGATCAGTGCCAAGTCCACGCCCACTGACGCCGCCGCGCTCTTGTTCCAGCGCCAGCTTCTCATGTCCAGAGGCGATTCTGCCCTCCTCCAGATGCCGCTCGCCGGAGAATTCGACCCCTCCCGAAACGACGTCGTTGACGCCTCAACCTTCAAATCTCACATTCCGGCTAGTGAGGATGCCGTCCAAGCTCTGTACAACGGCTTCGCCGGATCTATGAACGCCGCAGCTCAAGCTTCGAACCAGACTCAACACTTCCATCATCCTCAGTTACGAAGGGAGAGAATCGCAGAGAGAATGAAGGCGCTGCAAGAACTTGTTCCAAATGCCAACAAGACAGATAAGGCTTCAATGCTGGACGAGATAATAGACTACGTCAAGTTCTTACAGCTCCAAGTGAAGGTTCTGAGCATGAGCAGATTGGGCGGTGCAGCTGCGGTTGCCCCTCTTGTTGCTGATATCTCCTCTGagGGAGGAGGAGGTGATTGCATCCAAGCCACCGCCAACGGGAATCAAACGGCGTCGTCTTCCAACGACACTCTCACCATGACGGAGCACCAGGTGGCTAAACTCATGGAGGAAGACATGGGCTCCGCCATGCAGTACCTCCAGGGGAAAGGTCTCTGCCTCATGCCTATTTCCCTCGCCACCGCCATCTCCTCCGCCACTTGTCACTCCCGCAACCCCCTCCTCCCCGCCGCCAACAACCACCGCCACCCACCCAACGGGAACGCCGGAGAAGGCCCCTCCTCTCCCAGCATGTCCGTCTTGACCGTCCAATCTGCCACGGCGGCCAACGACGGCGCCGTCAAAGACGCTGCCTCCGTTTCGAAGCCCTGa 2478 0.5044 MAAGNGVFAEILDGEVYKYYSDGEWKKSSSAKTVPIINPTTRKTQYKVQAKSAQKSWAKTPLWKRAELLHKAAGILKDHKAPIAECLVKEIAKPSKDAVTEVHIYFLFLLLNFWIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVSALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVNCISFTGGDTGIAISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVAAALVEKVKAKVAKLTVGPPEDDCDITPVVSESSANFIEGLVMDAKLKGATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTRDVNKAMLISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGITNSINMMTKIKTTPSSSTEMQQPGINSLFNSSQIPLHQDLHNSTSHQIHHPSHQMQSDHLHDDFLDQILSNLPSCSWQDLAPKPLWDLNPSPADNNNAAAFHSLDDQANLASKFRNHQISAKSTPTDAAALLFQRQLLMSRGDSALLQMPLAGEFDPSRNDVVDASTFKSHIPASEDAVQALYNGFAGSMNAAAQASNQTQHFHHPQLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADISSEGGGGDCIQATANGNQTASSSNDTLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISSATCHSRNPLLPAANNHRHPPNGNAGEGPSSPSMSVLTVQSATAANDGAVKDAASVSKP 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1224 825 CDD ALDH_F11_NP-GAPDH 16 442 - -
Sto12g1224 825 Pfam Helix-loop-helix DNA-binding domain 631 676 IPR011598 GO:0046983
Sto12g1224 825 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 114 441 IPR016162 GO:0016491
Sto12g1224 825 Gene3D - 624 690 IPR036638 GO:0046983
Sto12g1224 825 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 249 260 IPR016160 GO:0016491
Sto12g1224 825 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 626 675 IPR011598 GO:0046983
Sto12g1224 825 SMART finulus 636 681 IPR011598 GO:0046983
Sto12g1224 825 Pfam Aldehyde dehydrogenase family 113 441 IPR015590 GO:0016491
Sto12g1224 825 Pfam Aldehyde dehydrogenase family 49 103 IPR015590 GO:0016491
Sto12g1224 825 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 221 228 IPR029510 GO:0016491
Sto12g1224 825 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 10 109 IPR016162 GO:0016491
Sto12g1224 825 PANTHER NADP-DEPENDENT GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 114 442 - -
Sto12g1224 825 PANTHER NADP-DEPENDENT GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 3 102 - -
Sto12g1224 825 SUPERFAMILY ALDH-like 16 441 IPR016161 GO:0016491
Sto12g1224 825 MobiDBLite consensus disorder prediction 792 811 - -
Sto12g1224 825 PANTHER ALDEHYDE DEHYDROGENASE 114 442 - -
Sto12g1224 825 PANTHER ALDEHYDE DEHYDROGENASE 3 102 - -
Sto12g1224 825 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 227 413 IPR016163 GO:0016620
Sto12g1224 825 MobiDBLite consensus disorder prediction 776 825 - -
Sto12g1224 825 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 629 686 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1224 Sto-Chr12 7788098 7805828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1224 3 457 Aldehyde Dehydrogenase Gene Family AT2G24270 79.681 0.0 797
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto12g1224 Aldedh 2.6e-114 CL0099
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1224 K00131 - gmx:100789100 789.26