Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1209 ATGATTCTAGAGGACCAAAGGGGTGATTTGGTGGATGAGAATGGAGCAAGAGACAAATTTCCTGTGGGTATGAGTGTTCTGGCTGTAGATGATGACCCAATTTGTCTCAAAGTGTTGGAAAACCTGCTTCGAAAATGCCAGTATCAGGTTACTACCACTAATCAGGCAGTTAAGGCCCTTAAAATGCTGAGGGAGAATAGAAACAAGTTTGACCTTGTCATTAGTGATGTAAACATGCCAGATATGGATGGATTTAAGCTTCTTGAGCAAGTAGGACTTGAAATGGACCTTCCTGTCATCATGTTGTCAGCACACAGTGATACCAGGCTTGTGATGAAGGGTGTTACGCATGGTGCATGCGACTATTTGCTGAAACCGGTTCGGATCGAAGAGCTTAAGAATATATGGCAACACGTGGTTCGGAGAAAGAAGCACGATGGCAAAGATCAGAGTAGGGCTTCCAAGGAGAACTCAAACCCTATGGCCAGGGAAGGGAATCAAGGAATCATGTCTGAAAATAATTTGGATCAAGATAAAAAGCTAGGCAAAAGAAGGAAGGACCAagatgaggaagaggaagatggTGAAGATAATGGCGAAGAGAATGAAGAGGATCCGGCATCGCAGAAGAAGCCTCGTGTAGTTTGGTCAGTTGAGCTGCACAGGAAATTTGTTGCTGCTGTTAATCAACTGGGTCTTGAGAAGGCTGTTCCCAAGAAAATTCTTGACCTTATGAATGTTGATGGGCTCACAAGGGAAAATGTGGCAAGTCATCTGCAGAAATATAGACTCTATCTGAAAAAGGCAACACAGCAAGTTCACATTGTTGCTGCTATGGGTAGTAATGATTCTTCGTACTTGCGGATGAGTTCATTAGAGGGATATGGAGAGTTCCGTAACTTGTCAGAATCAAGAAGGCTCTCATCATTTGCATCAAGTGGAATTTTTGGTAGGTTGAATTCCCCAGCAGGCTTGAACTTGAGAGGAATCGGTTCTACTGGACTGATCCGGCCCGGTCAGTCTCGATGCACCTCCATAAACGCCCTTGGAAATCTTCAGCAATCATCTATGTTGCCTGCAAATCAAAGCTCAAGTCTATTTCAGGGCATTCAAACACCGATGGAGCTTAGCCAATCTCAACCAAGAGATTGTACTACTGGCATTAGGCAGTTAAGTTCAGTTGATGATTCGGACGATTTTGCAGTAGCTTCCGGCTTCCTTGACAATAGAGCTACAGTTGGTAGTGCAAACAATTCGGTGCCTTGTGTGTCAAGTAATCATTTGATGTTACAGGGATGCTCACAACAATCTCATAATATGGGAACATTTAGAAATCAATCTTCTCTTGAAGCTACTTCTTTGAACTCGGAATCTTGCGATATTGGAGTATGTGGTTCTAATTTCTTGGATTACGCTCGATGTAGCGAAAGCTGGCAGGGTGCGGTTCAGTTATCTAGATTTCCCTCTAATTCTTTGCCATTGAATGAGACTTTCAATAATGATCAACTGCCTCCTAGTTGTTTGAATGTTTCTTCCTCCGATTTTTCTTCTGTGCCATTGGATGATCCTCAAGGTGAGCTACAATGCCAAGAAGGCTTAATTGGGAATGTGGTTCAGTCTTCAAGTTTTACACCAAGGCAGAACTGGGAACTACACAAGCAAGATTACAACCAAAACTTGAATTGCACTTTCAATTCTGTAAATTCATTTGTTTCTTCCAGTGGTGTCACAAGTACCTTTGAGCAGAGTTTAAATCAAAGTAATGCAATATGCAACATGAGGATGGATGCATCTTTCATTGACCCATTGAATGGTGCTACCCCATCGATCACTCGGAGCAATGAGATTGAGAGATTCGCTTCAGACGCGATGAGGATGAAGCCGAATGACGGTTTCATTCGAAATCTTGGATCCTTGGATGACATAATGACTGCAATGGTTAAAAGGGAGCAAAGTGAGATGTTAATGATGGATGGAGAATTGGGATTTGATGCTTACCCTATTGGATCTTGTATCTGA 2019 0.421 MILEDQRGDLVDENGARDKFPVGMSVLAVDDDPICLKVLENLLRKCQYQVTTTNQAVKALKMLRENRNKFDLVISDVNMPDMDGFKLLEQVGLEMDLPVIMLSAHSDTRLVMKGVTHGACDYLLKPVRIEELKNIWQHVVRRKKHDGKDQSRASKENSNPMAREGNQGIMSENNLDQDKKLGKRRKDQDEEEEDGEDNGEENEEDPASQKKPRVVWSVELHRKFVAAVNQLGLEKAVPKKILDLMNVDGLTRENVASHLQKYRLYLKKATQQVHIVAAMGSNDSSYLRMSSLEGYGEFRNLSESRRLSSFASSGIFGRLNSPAGLNLRGIGSTGLIRPGQSRCTSINALGNLQQSSMLPANQSSSLFQGIQTPMELSQSQPRDCTTGIRQLSSVDDSDDFAVASGFLDNRATVGSANNSVPCVSSNHLMLQGCSQQSHNMGTFRNQSSLEATSLNSESCDIGVCGSNFLDYARCSESWQGAVQLSRFPSNSLPLNETFNNDQLPPSCLNVSSSDFSSVPLDDPQGELQCQEGLIGNVVQSSSFTPRQNWELHKQDYNQNLNCTFNSVNSFVSSSGVTSTFEQSLNQSNAICNMRMDASFIDPLNGATPSITRSNEIERFASDAMRMKPNDGFIRNLGSLDDIMTAMVKREQSEMLMMDGELGFDAYPIGSCI 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1209 672 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Sto12g1209 672 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 653 IPR045279 GO:0009736
Sto12g1209 672 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Sto12g1209 672 MobiDBLite consensus disorder prediction 141 212 - -
Sto12g1209 672 SUPERFAMILY Homeodomain-like 209 268 IPR009057 -
Sto12g1209 672 SUPERFAMILY CheY-like 23 146 IPR011006 -
Sto12g1209 672 MobiDBLite consensus disorder prediction 154 174 - -
Sto12g1209 672 MobiDBLite consensus disorder prediction 176 190 - -
Sto12g1209 672 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Sto12g1209 672 PIRSF RR_ARR_type-B 3 672 IPR017053 GO:0003677|GO:0003700|GO:0009736
Sto12g1209 672 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Sto12g1209 672 Gene3D - 207 269 - -
Sto12g1209 672 CDD REC_typeB_ARR-like 26 140 - -
Sto12g1209 672 Gene3D - 24 160 - -
Sto12g1209 672 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 653 - -
Sto12g1209 672 SMART REC_2 24 136 IPR001789 GO:0000160
Sto12g1209 672 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1209 Sto-Chr12 7692072 7695508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1209 13 667 Response Regulator Gene Family AT5G58080 40.149 5.36e-127 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Sto12g1209 Response_reg 1.1e-25 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1209 K14491 - gmx:100776075 847.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1209 12 7692072 7695508 Sto12g1209 12 7692072 7695508 ECH