Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1191 ATGGCTTTTCACGACCATATTCCTCAAGAACTGGCTTTCCAGCCTTTCACGGACGACCAGCAGGGCCCTGCGCCGACGTGGCTGGGCAACGCCGGAGGGACTCTCCGGCAGCAGAATTTCCTCCACTTGCCGACGGAATCGGCGGCGGAGGACGTCCCCGGGAATAGCAGCAGCGAGGGGAATTGCGAAGGGGAGGATTTGGCCGAGTACAAGGCGGACATTCTGGGACACCCGCTGTACGAGCAGCTGTTGTCGGCGCACGTGTCGTGCCTGAGGATCGCGACGCCGGTGGACCAGCTGCCGAGGATCGACGCGCAGCTCCAGCAGTCGCAGCGCGTGCTGGAGAAGTACTCCGGCCTTGGAAATGGGGTTGTGGATGAGAAGGAGCTTGATCAGTTCATGACACATTATGTTCTATTACTGTGTGCCTTTAAAGAACAACTGCAACAACATGTCCGAGTTCATGCCATGGAAGCTGTCATGGCTTGTTGGGAGCTTGAGCAGTCTCTTCAGAGCCTCACTGgtgTGTCTCCAGGTGAAGGAACAGGTGCAACAATGtcagatgatgaagatgaacaaGTAGAGAGCAATGCAAACCTGTATGAAGGTGGCTTTGATGGTGTTGATTCTCTTGGCTTTGGTCCTCTTGTTCCCACTGAAACTGAAAGATCTTTAATGGAACGTGTCAGGCAGGAATTAAAGCATGAACTCAAACAgGGTTACAAGGAGAAGATAGTGGACATACGAGAAGAGATTCTGCGGAAGAGGCGCGCCGGGAAGCTGCCGGGGGACACCACCTCCCTTTTGAAAGCTTGGTGGCAGTCACATTCTAAATGGCCCTACCCTACTgaaGAAGACAAGGCAAGGCTGGTGCAGGAAACAGGATTGCAACTAAAGCAGATAAATAATTGGTTCATTAATCAAAGGAAAAGGAATTGGCATACTAATCCTTCATCTTCTACTACCTCTAAATCCAAACGCAagagTGCAGGTGAAAGCAGTAATCAAAGCTTCATGTGA 1020 0.5039 MAFHDHIPQELAFQPFTDDQQGPAPTWLGNAGGTLRQQNFLHLPTESAAEDVPGNSSSEGNCEGEDLAEYKADILGHPLYEQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVLEKYSGLGNGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDEDEQVESNANLYEGGFDGVDSLGFGPLVPTETERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTTSKSKRKSAGESSNQSFM 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1191 339 Pfam KNOX1 domain 70 111 IPR005540 GO:0003677|GO:0005634
Sto12g1191 339 Pfam ELK domain 232 253 IPR005539 GO:0003677
Sto12g1191 339 MobiDBLite consensus disorder prediction 309 339 - -
Sto12g1191 339 Pfam Homeobox KN domain 272 311 IPR008422 GO:0003677|GO:0006355
Sto12g1191 339 ProSiteProfiles ELK domain profile. 232 252 IPR005539 GO:0003677
Sto12g1191 339 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 16 333 - -
Sto12g1191 339 SMART KNOX2_2 119 175 IPR005541 GO:0003677|GO:0005634
Sto12g1191 339 SMART KNOX1_2 68 112 IPR005540 GO:0003677|GO:0005634
Sto12g1191 339 CDD homeodomain 255 316 IPR001356 GO:0003677
Sto12g1191 339 Gene3D - 258 335 - -
Sto12g1191 339 SUPERFAMILY Homeodomain-like 254 318 IPR009057 -
Sto12g1191 339 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 16 333 - -
Sto12g1191 339 SMART HOX_1 254 319 IPR001356 GO:0003677
Sto12g1191 339 ProSiteProfiles 'Homeobox' domain profile. 252 315 IPR001356 GO:0003677
Sto12g1191 339 Pfam KNOX2 domain 125 174 IPR005541 GO:0003677|GO:0005634
Sto12g1191 339 SMART ELK_2 232 253 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1191 Sto-Chr12 7571641 7576403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1191 51 328 Homeobox Transcription Factor Family AT5G25220 81.915 1.23e-168 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Sto12g1191 KNOX2 2.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1191 - - gmx:100816347 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1191 12 7571641 7576403 Sto12g1191 12 7571641 7576403 ECH