Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1189 ATGGCTGGAATGCTTCCTGGAGTGGAGTGTGCTAGAAGAAGAAGATTCCATGTCCATgattcaccatcatcatcttcatcatcatccatcacTTCCCATGCTTCCACTAGGCGTTCTTCCTTCTGTTTGTACACTACCAGCCATGAATCtcttccctcttcttcctctttacTTCAAAGAAGCTTCTTCTACCAGGCATACCCAGATGAGATGCTGGGAGGTGCAGCCAGAGAAGCCAGAGAGAGATTGGATGAGAGACTAAGAGCCCAAACCAAATCACTAAACAAAAgGGAAAGCAAGAAGGAGAAGTTGAAATGTGAAGCAGAGTTGAAGAGTAGtagtagtggtggtggtggtggaagcaGAAGGTTCAAATGGAGCAAGATGGTGATGAAGTGGAAGTCCTCAGAGCAAGAGGATTGTGCTGTGTGCTTGGAATCATTCAAAGAAGGGGACACACTCACTCATCTTCCTTGTGCCCATAGGTTCCACTCAACCTGTGTCCAGCCATGGCTCCACAATAATGCTCACTGCCCTTGCTGCAGAATCAACATCTTCATCTCCCACTAG 570 0.4 MAGMLPGVECARRRRFHVHDSPSSSSSSSITSHASTRRSSFCLYTTSHESLPSSSSLLQRSFFYQAYPDEMLGGAAREARERLDERLRAQTKSLNKRESKKEKLKCEAELKSSSSGGGGGSRRFKWSKMVMKWKSSEQEDCAVCLESFKEGDTLTHLPCAHRFHSTCVQPWLHNNAHCPCCRINIFISH 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1189 189 SUPERFAMILY RING/U-box 130 187 - -
Sto12g1189 189 ProSiteProfiles Zinc finger RING-type profile. 141 182 IPR001841 -
Sto12g1189 189 SMART ring_2 141 181 IPR001841 -
Sto12g1189 189 MobiDBLite consensus disorder prediction 13 32 - -
Sto12g1189 189 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 184 - -
Sto12g1189 189 CDD RING-H2_PA-TM-RING 140 182 - -
Sto12g1189 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 186 IPR013083 -
Sto12g1189 189 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 184 - -
Sto12g1189 189 Pfam RING-like zinc finger 140 168 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1189 Sto-Chr12 7556899 7557907 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1189 1 88 C3H Transcription Factor Family AT2G15580 53.684 3.91e-23 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1189 - - gmx:100527583 189.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1189 12 7556899 7557907 Sto12g1189 12 7556899 7557907 ECH