Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1187 ATGGGTTCCACCAATAGTCGACTGGGGTCTCGCCCTTTGACCCCTCGAGTCAACGGCACCAATCGCTTCAGGTTCTCCTCTCTCATCTGTGGTGCCTCCACCTCCCGCTCTACTCACGAGATGGAAGAAGATCAACCATCTGAACATCAGGGAGACTCTGCAACAGACTTCGATGATGAAAATCAGAAAGTCATCGAGGAATCATCTTTATCATGTACAGAACCTAGAATTAGCTGCAGCCCCCATGCTGAAATTGAAAGTTCATCTGATACCAGAAATGAGTTCAGGGAGATAACCACTGCTGAAGGTTCTTCCAGAAATGCTTCAACTAGTAATCAGAGGAAGTGCTTGTCTGAAAGTAAGGAGCTAGTTCCTCCTCATCAGGTAAGAGCTGATCATAGTCATGATGAATCTTATAGGGATATTAGCAACACAGCTAGTACTTCATTTGTAGAACAGCAGTCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAAGATGCAGTCAATAATATTGGTGGTTCAGTGGATAGTGGTGTTACTCAAATACCTCGTGAGACAATGTATCCAAGGAGCTCAGCCTCTCAACAGCATGGAGATTCCAGTTCTGTTGAAATTCCTAATGAGAATCACACTGGTGCAGTTATAGCTATGCAGAATTCTGAATTGGATCATGTTGCTCAAGTTTCCAGTTTACCAGTAACTTCGGAGTTGCCTGAAAATGAAACTCGTCAAGAGACAACATCTTCAGGTTTAGGTTTCCTTGTGTCCAATAGGGAAAGAGGATTGGGAAATGACAGTGTGTTTCATGTTGATGTTGTCACAATATCATCCAACATTTTATCTGGTGGCAATGCTGATATTGCTGATCACGATGCCCGAAGGGATGGTAGAAGGCTATTTTGGGATGCTTTTTCAAGACGTAGTTCTAGAAGGTTTGGTGATTCTCCAACCATTCTCTTCTCAGCTGGTGATGCTGATGATCCAAGATCCCAAGATCGATGGCTTCTTGATTTGAGTAATGATTCCTCAAATGATGGGGTTGGAGGTGATTCTGGATACCTGGGCAGTAGAATTCACAGATTGAATGATCGAATGCGGCCTTCAAGATCTGAGATTTGGGAAAGACTTCGTGGTGGCCTTGATGAGATTGGCCGGTTGAATTCTTCTTGTCCATTAGGACTCCACCCTGATGGCATGTGCTCATGCGAGTCTTTCCCAATGGCTGAGGAATCCAGCACTCGAGCAAGTATATCAAGAATAGCCATGCTTGCTGAAGCTCTATTTGAGGTTTTGGATGAAATCCATCGCCAACCTGTATCACTTTCCCTGGTCTCTCTCCCAGCGCCTGAATCAATTGTTGACTCTTTCCCTCTTAAGTGTCACAAAAAGGTTGACACAGCTGATGGTGGCAATGATGCTGAACAATGCTACATATGCCTGGCGGAGTACGAAGAAGGGGACAAAATTCGAGTTCTCCCTTGCAATCATGAGTATCACATGTCGTGTGTTGATAAGTGGCTTAAAGAAATACATGGTGTATGCCCTCTTTGTCGTGGGAATGTTTGTGGAGAGTCCAACGAGTCTTCTGCCTCTCACACAGAAGTGCCATCTCATTAa 1623 0.443 MGSTNSRLGSRPLTPRVNGTNRFRFSSLICGASTSRSTHEMEEDQPSEHQGDSATDFDDENQKVIEESSLSCTEPRISCSPHAEIESSSDTRNEFREITTAEGSSRNASTSNQRKCLSESKELVPPHQVRADHSHDESYRDISNTASTSFVEQQSSDPVSVNVSANKDAVNNIGGSVDSGVTQIPRETMYPRSSASQQHGDSSSVEIPNENHTGAVIAMQNSELDHVAQVSSLPVTSELPENETRQETTSSGLGFLVSNRERGLGNDSVFHVDVVTISSNILSGGNADIADHDARRDGRRLFWDAFSRRSSRRFGDSPTILFSAGDADDPRSQDRWLLDLSNDSSNDGVGGDSGYLGSRIHRLNDRMRPSRSEIWERLRGGLDEIGRLNSSCPLGLHPDGMCSCESFPMAEESSTRASISRIAMLAEALFEVLDEIHRQPVSLSLVSLPAPESIVDSFPLKCHKKVDTADGGNDAEQCYICLAEYEEGDKIRVLPCNHEYHMSCVDKWLKEIHGVCPLCRGNVCGESNESSASHTEVPSH 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1187 540 MobiDBLite consensus disorder prediction 125 139 - -
Sto12g1187 540 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 538 - -
Sto12g1187 540 MobiDBLite consensus disorder prediction 1 20 - -
Sto12g1187 540 MobiDBLite consensus disorder prediction 234 253 - -
Sto12g1187 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 444 524 IPR013083 -
Sto12g1187 540 SMART ring_2 478 519 IPR001841 -
Sto12g1187 540 MobiDBLite consensus disorder prediction 66 86 - -
Sto12g1187 540 Pfam Ring finger domain 477 520 IPR001841 -
Sto12g1187 540 ProSiteProfiles Zinc finger RING-type profile. 478 520 IPR001841 -
Sto12g1187 540 MobiDBLite consensus disorder prediction 100 118 - -
Sto12g1187 540 MobiDBLite consensus disorder prediction 37 65 - -
Sto12g1187 540 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 538 - -
Sto12g1187 540 MobiDBLite consensus disorder prediction 34 139 - -
Sto12g1187 540 SUPERFAMILY RING/U-box 471 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1187 Sto-Chr12 7547552 7551562 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1187 391 524 C3H Transcription Factor Family AT5G45290 52.318 3.00e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1187 - - gmx:100783604 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1187 12 7547552 7551562 Sto12g1187 12 7547552 7551562 ECH