Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1180 ATGAGTATAGATGTTGAAGATGGCCACACCTTGCATCTCGTTGTCAGGCAACCCGATCTACCATCACTAGGAAGTTTGCCCAATCATTCAGCAACTGATCCACGGTCAAGCACAAGCAATAGTCACAGTAATCAAGTAGCCCCTGGTGTTTTTATTGAAACTTTTAATGTGCCTGTTCAGGGAGACGGAGTTCCTCCAGAAGTCAATAGGTCAGGTGACCTTAGGGGATTTAATAAGTTTAAAGTGGTTGAGAAGTATCCGGGGCATGATTCTCAAGGGCTTGGAAGAACATCAGCTTCTACTGGCATACTGGATTCATTTCATCCTCAACCTGAACAAGCTGGTTCGCGGAGTTCGTCTGATAGGTTGCGTTTTGGACTGCCAACAGCAATTTCTTCTTTGGGGTCTTTACAGCCTCCTGTCATTCCTGATTCTTTGACAACTTTGTCCCAGTACCTGACTCATCTACGGAATGAATTTGAAGCAATTGATCACATATTATTGGCAGTCAGAGAAGGGGGAAATAATGTCCAAGCAGCCGAGGCTCATAGGAGTGAAGAAGGAtccatttcttcttcatcttcagtgTCTGCTCCAGAAGGGATTTTGTCACCTGCATCCTTAGCAGAAGTCTTGCATTCTACCAGACGAATGTTCATTGAACAAGCTGGCGAGGGTTTATATCAACTTGCAAGACAGTTGGAGAATCAAGCAAATGTGACTGATCCCTTGTTGCGATCAAACGCCCAATCAAGGGCTTGGAGGTCTGGAGTTCTGTTTTACAATCTTGGTGCATTTTTACTTGAGCTTGGCCGCACGACCATGGCATTACGTTTGGGTCAAACACCGTCTGAAGCTGTAGCTAATGGTGGACCAGCAGTTTTTATATCTTCATCCGGTCCTAACCATATCATGGTTCAGCCTTTTCCTTTCCAACCTGGATCAAGCTTTGGTGCTGCCCCTGTTGCAGCTGTGCAGCCCCCCTCTGGTTTAGGAAGTGGACTTGGCTCAAGTTTTTACCCAAGGCGTATAGATATACAGATACGGCGAGGTACATCAACATCTGCAGCTAATGTCAACCGAGAAGAACAGGGTGACGCACAGACTGCCTCAGTACAAAGAAATCCAGTTGAAGTTTCGGTTAATCAAGCAAGCTCACGACTACCAGAGGATTTATCTTTTGCTGGGGAGTCAGGAGTACGGATAGTGCCCATTAGAACCATGGTTGCAGCAGTACCTACTCCTTTAGCTCGCACTGCTTCAGAATCTTCTGGTAATTCTATAGGCCTTTACTATCCAGTTATTGGGAGATTTCAACAGGCACCATCTGGACCTGGAAATATTGAATCAGGATCTCAACAACCTAGTCCACTTCATGCTTCTGGTCTTCATGCTGCACAACAATCCACTCCTGAATCTACTGGGCAAAGGCAAAGCACGGATGATCCCGTAAGAAATGGATCCTCATCAGCTCCTAGCCTAAGACAAGAGGCATCTAACTCCCGCAGGGTGAACATAAATATTTTGACAGCTGGTGGACTCCAAAACAGCAACCAAGAATCTGAGAGGCAGATACCCAATAATGTACTTCAGTTTATAAGGGCACTCTTTCCTGGTGGTGAAATACATGTGGAGGATTCTAGTTCACAGGGAACAACTGCTGGTGGTTCTGCCCCAGATCACGCTGGAACATCAACGGGTGTTGCTCCTGCCCCTGAAGCAGAACCCAGAGTTAGTGAAGAAGGCCTATTTTTGTCTAATTTACTTCGGGAGGTCATGCCCCTCATTTCTCAACAAGCAGGATCTGGGACACATTTAACCTCGCAAGGCGAAAATGCTTCAGATGATCAAACAGCATCTGACTCTTCCACCCAGGTTGGGTCATCGCGCAGACAGAGTGATTCCGAGCCAGTCCCTCCTAATCCAAAACGTCAAAAGATTGAGGCTTCTTTTGAATGTCGGCCCAAGTTAACCAAAGCCCAGAGCGAAAGAagccttatatatatagagaagcgattagggtttttggCCTCTGACACTCGTCTTCATTCTTCGACTGCAGCTTGGCGATTGCTCCCTtgcacagagagagagagagtcccCGCGGCGGCAACCATGGCTGAGCAAACTGAGAAGGCTTTTCTGAAGCAACCAAAGGTTTTCCTATGCTCCAAGAAATCTGGTAAGGGAAAGAGGCCCGGAAAAGGTGGCAATCGCTTTTGGAAGTCCATTGGGCTCGGGTTCAAGACTCCCAGGGATGCAATCGAAGGAACctatattgataaaaaatgcCCCTTCACTGGCACCGTTTCCATCCGTGGTCGTATCTTAGCAGGCACTTGCCACAGTGCTAAGATGACGAGGACTATTATTGTTAGAAGGAATTACCTTCACTTTGTCAAGAAGTATCAGAGGCCTATCTCAAAGACAGTGAGGTTCAACGTACTGAAAGTGATCCCAGCTGGATCTTCTAGTGGTGTGAAAAAGGCATTCACTGGaatttga 2505 0.4487 MSIDVEDGHTLHLVVRQPDLPSLGSLPNHSATDPRSSTSNSHSNQVAPGVFIETFNVPVQGDGVPPEVNRSGDLRGFNKFKVVEKYPGHDSQGLGRTSASTGILDSFHPQPEQAGSRSSSDRLRFGLPTAISSLGSLQPPVIPDSLTTLSQYLTHLRNEFEAIDHILLAVREGGNNVQAAEAHRSEEGSISSSSSVSAPEGILSPASLAEVLHSTRRMFIEQAGEGLYQLARQLENQANVTDPLLRSNAQSRAWRSGVLFYNLGAFLLELGRTTMALRLGQTPSEAVANGGPAVFISSSGPNHIMVQPFPFQPGSSFGAAPVAAVQPPSGLGSGLGSSFYPRRIDIQIRRGTSTSAANVNREEQGDAQTASVQRNPVEVSVNQASSRLPEDLSFAGESGVRIVPIRTMVAAVPTPLARTASESSGNSIGLYYPVIGRFQQAPSGPGNIESGSQQPSPLHASGLHAAQQSTPESTGQRQSTDDPVRNGSSSAPSLRQEASNSRRVNINILTAGGLQNSNQESERQIPNNVLQFIRALFPGGEIHVEDSSSQGTTAGGSAPDHAGTSTGVAPAPEAEPRVSEEGLFLSNLLREVMPLISQQAGSGTHLTSQGENASDDQTASDSSTQVGSSRRQSDSEPVPPNPKRQKIEASFECRPKLTKAQSERSLIYIEKRLGFLASDTRLHSSTAAWRLLPCTERERVPAAATMAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMTRTIIVRRNYLHFVKKYQRPISKTVRFNVLKVIPAGSSSGVKKAFTGI 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1180 834 MobiDBLite consensus disorder prediction 543 579 - -
Sto12g1180 834 PANTHER SCYTHE PROTEIN UBIQUITIN-LIKE DOMAIN PROTEIN 4 648 - -
Sto12g1180 834 MobiDBLite consensus disorder prediction 93 122 - -
Sto12g1180 834 Pfam Ribosomal_S17 N-terminal 709 777 IPR032440 -
Sto12g1180 834 Gene3D - 694 805 - -
Sto12g1180 834 MobiDBLite consensus disorder prediction 599 639 - -
Sto12g1180 834 MobiDBLite consensus disorder prediction 19 45 - -
Sto12g1180 834 MobiDBLite consensus disorder prediction 88 122 - -
Sto12g1180 834 MobiDBLite consensus disorder prediction 443 502 - -
Sto12g1180 834 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 4 648 - -
Sto12g1180 834 MobiDBLite consensus disorder prediction 441 502 - -
Sto12g1180 834 SUPERFAMILY Nucleic acid-binding proteins 773 822 IPR012340 -
Sto12g1180 834 MobiDBLite consensus disorder prediction 599 655 - -
Sto12g1180 834 MobiDBLite consensus disorder prediction 23 45 - -
Sto12g1180 834 MobiDBLite consensus disorder prediction 353 377 - -
Sto12g1180 834 MobiDBLite consensus disorder prediction 545 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1180 Sto-Chr12 7500112 7508824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1180 706 834 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 72.327 4.41e-60 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1180 K23390 - gmx:100783070 778.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1180 12 7500112 7508824 Sto12g1180 12 7500112 7508824 ECH