Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1164 ATgggtaaaaaaaagaaacaagtaGGAGAAAAATCGATTGAGGATAGTGGAAATCAAAGCAAAGTGGGAGATAATAGCTCTAAAGCTTATGATAAGGATACTATGGTATTTATATCCATGGCTCAAGAGTTGAAGGATGAGGGAAACAAGCTGTTCCAAAAGAGGGACCACGAAGGAGCTATGCAAAAATATGAGAAAGCCCTCAAATTGCTTCCAAGGAATCATATAGATGTGTCCTGTCTGCGGAGTAACATGGCTGCATGCTATATGCAGATGGGACTCAGTGAGTACCCAAGGGCAATTCATGAATGCAATTTGGCTCTTGAAGTTACGCCGAAGTATAGTAAAGCGCTTTTGAAGAGGGCAAGGTGCTATGAGGCTCTAAATAGGCTGGATTTATCTCTGAGAGATGTTAGTGCTGTTTTGAAGAAAGAGCCGAATAATGTCATGGCATTGGAAGTTTCAGAGAGAGTGAAAGCTGCACTTGAAGAGAAGGGACTAAAAGTAGTTGACACAGTAATTGAGTTGCCTCCGGATTATGTTGAACCTTCTTATGTGCCTCCAGAAGTAGTAAAAGAGAAGACacacaagaagaagagcaaAAAAAGTATTGAGAAGAAGAAGGCTGAGAACAGTATTGAGAAGAAGGAGGTGGCTGAGCATAGTATTGAGATGAAGAAGGCTGAGAACAGTATTGAGGAAAAGAAGGCTGGGAACAAATCCAAGAAGAAGGCAACCAAGGAAAAGATTGACGAGAAGAAGGCTGATATAAAGGAGGTTGtggatgaaaaaattaatggtAGAAAGGAAGATACACCTAAGAAGACAGCAAAGCTTGTTTTTGGCGAGGATATCAGATGGGCGGAATTGCCAGTCAATTGCAGCCTCCTGCAGCTAAGAGAGGTTATCAGTGATCGGTTTCCAAGCCTAGGAGCAGTTCTTGTCAAATACAGGGACCAAGAAGGTGATTTAGTCACAATCACTTCTGATGAAGAATTAAGATGGGCAGAAACATCCACAGGATCACAGAGTGTTATCCGCCTGTACATAGTGGATGCTGATCCTGAGCAGGATCCATTCTTTGAGAAAATTAATGAGAAGAAGGGGAAAAAGCTTGCCATTAATAATGCATCTGAGAATGGTTGCGCGGTAAAAGAAACGGAAACTATTAGTTCATCTTGCATCGAGGATTGGATAATCCGGTTTGCCCAATTGTTCAAGAACTATGTTGGATTTGAATCTGATAGGTATTTAGATTTTCACGAACTCGGAATGAAGCTGTATTCTGAGGCTATGGAGGAGACAGTTACAAGTGAAGAAGCACAAGGCCTATTTGACATGGCAGGCTATAAGTTCCAAGAGATGGCAGCTCTGGCATTGTTCAACTGGGGAAATGTTCACATGTCTAGAGCAAGGAAGAAAGTGAATGTCACAGAAGAATGTTCTAAAGAGCACttgtatgaaaaaataaaaaaatcatatgacTGGGcacagaaagaatataaaagagCAGGAGAAATATATGAAGCGGCCATTAACATTAAATCAGATTTTTACGAAGGCTTCCTGGCACTAGGGCAACAGCAGTTTGAGCAAGCAAAACTTTCTTGGTATTATGCAATTAGCAGAAATGTTGAGTCAGAAACACAGCCCTCTGACGAGATTCTTCAACTTTACAACAAGGCTGAAGAAAATATGGAGAAAGGAATGCTGATATGGGAAGAATCAGAAAAGCAGCGCTCAAAAGAACATGCAGCACAGGTAGCAAAATTGAGATCCCAAATAAATCTCCTGTGGGGTACCATGCTATACGAGCGTTCAATTGTGGAATTCAAAATAGGGCTACCAGTATGGCATGAATGTCTAGAAGTTTCTGTTGAGAAGTTTGAACTTGCTGGAGCTTCTCCAACTGATATAGCTGTAATGTTGAAAAATCACTGTTCTAATAATACTGCTGCAGAAGGCCTAGGatttaaaattgatgaaatagTACAAGCATGGAACGAGATGCATGAAGCTAAAAAATGGCAGAGTCGAGTTTCATCATTTCATTTGGAACCCTTGTTCAGAAGGCGAGTTTCTGAAATTTATCATGCCTTAGAGCTTGCATGA 2112 0.3902 MGKKKKQVGEKSIEDSGNQSKVGDNSSKAYDKDTMVFISMAQELKDEGNKLFQKRDHEGAMQKYEKALKLLPRNHIDVSCLRSNMAACYMQMGLSEYPRAIHECNLALEVTPKYSKALLKRARCYEALNRLDLSLRDVSAVLKKEPNNVMALEVSERVKAALEEKGLKVVDTVIELPPDYVEPSYVPPEVVKEKTHKKKSKKSIEKKKAENSIEKKEVAEHSIEMKKAENSIEEKKAGNKSKKKATKEKIDEKKADIKEVVDEKINGRKEDTPKKTAKLVFGEDIRWAELPVNCSLLQLREVISDRFPSLGAVLVKYRDQEGDLVTITSDEELRWAETSTGSQSVIRLYIVDADPEQDPFFEKINEKKGKKLAINNASENGCAVKETETISSSCIEDWIIRFAQLFKNYVGFESDRYLDFHELGMKLYSEAMEETVTSEEAQGLFDMAGYKFQEMAALALFNWGNVHMSRARKKVNVTEECSKEHLYEKIKKSYDWAQKEYKRAGEIYEAAINIKSDFYEGFLALGQQQFEQAKLSWYYAISRNVESETQPSDEILQLYNKAEENMEKGMLIWEESEKQRSKEHAAQVAKLRSQINLLWGTMLYERSIVEFKIGLPVWHECLEVSVEKFELAGASPTDIAVMLKNHCSNNTAAEGLGFKIDEIVQAWNEMHEAKKWQSRVSSFHLEPLFRRRVSEIYHALELA 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1164 703 PANTHER PROTEIN CLMP1 582 702 IPR044517 -
Sto12g1164 703 PANTHER PROTEIN CLMP1 3 585 IPR044517 -
Sto12g1164 703 Coils Coil 218 263 - -
Sto12g1164 703 SUPERFAMILY CAD & PB1 domains 276 364 - -
Sto12g1164 703 Pfam PB1 domain 276 352 IPR000270 GO:0005515
Sto12g1164 703 SUPERFAMILY TPR-like 38 160 IPR011990 GO:0005515
Sto12g1164 703 Gene3D - 264 352 - -
Sto12g1164 703 PANTHER PROTEIN PHOX3 582 702 - -
Sto12g1164 703 PANTHER PROTEIN PHOX3 3 585 - -
Sto12g1164 703 MobiDBLite consensus disorder prediction 191 249 - -
Sto12g1164 703 SMART tpr_5 41 74 IPR019734 GO:0005515
Sto12g1164 703 SMART tpr_5 115 148 IPR019734 GO:0005515
Sto12g1164 703 SMART tpr_5 79 114 IPR019734 GO:0005515
Sto12g1164 703 ProSiteProfiles PB1 domain profile. 274 353 IPR000270 GO:0005515
Sto12g1164 703 MobiDBLite consensus disorder prediction 205 249 - -
Sto12g1164 703 ProSiteProfiles TPR repeat profile. 41 74 IPR019734 GO:0005515
Sto12g1164 703 MobiDBLite consensus disorder prediction 1 27 - -
Sto12g1164 703 Gene3D Tetratricopeptide repeat domain 38 168 IPR011990 GO:0005515
Sto12g1164 703 SMART PB1_new 274 353 IPR000270 GO:0005515
Sto12g1164 703 CDD PB1 282 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1164 Sto-Chr12 7403979 7406442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1164 24 148 Calmodulin-binding Proteins AT3G25230 32.117 2.06e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1164 - - gmx:100820306 957.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1164 12 7403979 7406442 Sto12g1164 12 7403979 7406442 ECH