Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1123 ATGGAAAGTAAGGGACTGGAGCTGAAGCCACAGCCCAAAAAGAATCTATGGAAGCCTGAGGAAGACCTTGTTCTGAAAGCCTACATTGAAGCTCACGGTGAAGGGAACTGGGAAGCTGTGTCCAAAAATTCAGGGCTGAAGAGAGGAGGGAAAAGTTGCCGGCTGAGATGGAAGAACTATTTGAGACCTGACATAAAACGTGGAAGTATGTCTGAAGAGGAACAAGACCTTATCATCAGGCTGCATAATCTTCTTGGCAACCGATGGTCACTGATAGCTGGAAGGCTTCCTGGTAGAACCGACAACGAAGTGAAGAACTACTGGAATACACATTTGAACAAGAGGTGCCTCCCTCGAGGCAAAAGGAAATCCAACATCGATTCAAACAAGGATCACCAAGAAACCAACAAGAAATCACGGACAACTAGTATATCTGACTTTCCGAATTCGACAAGCAACGCAGAGACGGCGTTAATGGAAGcaaggaaagaagagagaagtaACATTACCGACTATCGGATCGACGAAACGCAGAGCTTCGACTATGACCTAGATTTTCCGATTGTGCCTACTGAGAATAATAATGCGGCGTTTGGTTTTGATGAGGAGCCTTTCATGACGAGCTTGGATTCCATTCTCTTGTTTGGAACTGAAGCGTTCGATTATGGATGGTTGGAGTCCAATTTGCACGCACAGTGGATCATACCGTAG 711 0.4444 MESKGLELKPQPKKNLWKPEEDLVLKAYIEAHGEGNWEAVSKNSGLKRGGKSCRLRWKNYLRPDIKRGSMSEEEQDLIIRLHNLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKRCLPRGKRKSNIDSNKDHQETNKKSRTTSISDFPNSTSNAETALMEARKEERSNITDYRIDETQSFDYDLDFPIVPTENNNAAFGFDEEPFMTSLDSILLFGTEAFDYGWLESNLHAQWIIP 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1123 236 CDD SANT 69 112 IPR001005 -
Sto12g1123 236 MobiDBLite consensus disorder prediction 120 139 - -
Sto12g1123 236 CDD SANT 17 61 IPR001005 -
Sto12g1123 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Sto12g1123 236 PANTHER TUBER-SPECIFIC AND SUCROSE-RESPONSIVE ELEMENT BINDING FACTOR 7 217 - -
Sto12g1123 236 Gene3D - 69 144 - -
Sto12g1123 236 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Sto12g1123 236 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Sto12g1123 236 SMART sant 66 114 IPR001005 -
Sto12g1123 236 SMART sant 13 63 IPR001005 -
Sto12g1123 236 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Sto12g1123 236 Pfam Myb-like DNA-binding domain 15 61 IPR001005 -
Sto12g1123 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Sto12g1123 236 Gene3D - 14 66 - -
Sto12g1123 236 MobiDBLite consensus disorder prediction 118 152 - -
Sto12g1123 236 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 7 217 - -
Sto12g1123 236 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1123 Sto-Chr12 7051382 7052567 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1123 1 184 MYB Transcription Factor Family AT5G52600 56.522 2.10e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto12g1123 Myb_DNA-binding 1.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1123 K09422 - mnt:21392312 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1123 12 7051382 7052567 Sto12g1123 12 7051382 7052567 ECH