Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1091 ATGATGGTCCAATCAAAGAAGTTCAGAGGTGTCAGGCAACGCCATTGGGGCTCTTGGGTCTCCGAAATTCGCCATCCTCTCCTGAAGCGGAGGGTGTGGTTGGGCACATTTGAGACAGCAGAGGAGGCGGCTCGCGCCTACGATCAAGCCGCCATTTTGATGAGCGGCCGAGGGGGCGAAGGATCTAGAAGAGATTCTGCACGCGAAGCTGAGGAAATGCGGGAAGATACCGTCGGCGTCCATGACGTGTCTGAGGCTGGACACCGAGAATTCTCACATCGGAGTGTGGCAGAAACGCGCCGGCCATCGCTCCGATAA 318 0.5723 MMVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRGGEGSRRDSAREAEEMREDTVGVHDVSEAGHREFSHRSVAETRRPSLR 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1091 105 CDD AP2 6 57 IPR001471 GO:0003700|GO:0006355
Sto12g1091 105 Gene3D AP2/ERF domain 6 61 IPR036955 GO:0003700|GO:0006355
Sto12g1091 105 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 2 60 - -
Sto12g1091 105 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Sto12g1091 105 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Sto12g1091 105 MobiDBLite consensus disorder prediction 56 105 - -
Sto12g1091 105 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 2 60 - -
Sto12g1091 105 SUPERFAMILY DNA-binding domain 7 57 IPR016177 GO:0003677
Sto12g1091 105 SMART rav1_2 7 66 IPR001471 GO:0003700|GO:0006355
Sto12g1091 105 MobiDBLite consensus disorder prediction 61 105 - -
Sto12g1091 105 ProSiteProfiles AP2/ERF domain profile. 7 65 IPR001471 GO:0003700|GO:0006355
Sto12g1091 105 Pfam AP2 domain 7 55 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1091 Sto-Chr12 6819544 6820085 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1091 2 60 AP2-EREBP Transcription Factor Family AT1G15360 86.441 4.69e-35 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto12g1091 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1091 - - egu:105047821 108.997