Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1071 ATGGCTGATGATAAGAAGGAAGGGCCAGTTTTTCTGTGGCCAAAAGCCAGAAAAGATTTGGCTGCGGAGTGCATAATTATGCTAGTAGGACAGAATGCTTTAAGTGCAAAACACCTAGGGATTATGGATTGGATCATCTTCTTGTCTGAAACGTTCGGCATGAGTTTTTCTGATCATCCCTCCTCTTCTAGCTTCATGCTATCGCCGCCGTCTTTTGTAGCAGATGACGATTCCAATGGCGGGTGGCCTCAATTCCCACTCAACAACGAACATTTCGATCCACAATCTATGTTTGATCAGCCTCCTTCATTCAAGAGGGCCAGAACTTCTGAGAACAACCACTTCAATCCCTTGCCATACCCGCCCATGAATTCTAGAATGCACCACCCACAAAATCCTCCTTCTAGCAGGGGAGGAGGAACGAGCCACATTTTCTTCAAGACTCGCATGTGTGCCAAATTCAAAATGGGAATGTGCAGGAACGGCGAGAATTGCAACTTTGCACATGGCGTTGAGGATATGAGGCAGCCACCTCCAAATTGGCAGGAACTTATTGGACTGCGTGAGGAAGAACAACGGCCATCTGGGAATTGGGACGATGACCAGAAAATCATACACAAGATGAAGCTGTGCAAGAAGTACTACAATGGCGAGCAATGCCCTTACGGGGAAAGGTGCAATTTTCTTCATGAAGACCCTTCTAAGTTCAGGGATGATGCTGGAAAGTGCAGGGAGAGCTCAGCAATAAGCCTTGTGGCTAATGGATCGCCAAAGTCTCACATGAATGGCTCTAATAATTCAGATAGTAATAAGGCTTTGAGCACAGGGTGTGATGGTAATCTCCGATCAAATGGCAAGGCTCCGTTTTTTAAGACCAAGTTATGTACCAAGTGGGAGACAACAGGACATTGCCCTTTTGCTGATAAATGTCACTTTGCACATGGACAAGCAGAGTTACAAGGGCCTATTGGACGCACAGAAGCAGAAGCTGTAGGTTCTTTTCCAACTTCAACAAGAGCTACTTCTCTTCCTGTGAATGATGCATCTCCCACCAACACTGCAAGTGTACCCGATTCAAATGAAGATGAGCAGAATAAGAAGAGTTTGCTCAAGTGGAAAGTAAACAAGAAGATCAATCGAATTTATGCTGATTGGCTTGATGATGTTCCATTGCCAAGGTAG 1182 0.4535 MADDKKEGPVFLWPKARKDLAAECIIMLVGQNALSAKHLGIMDWIIFLSETFGMSFSDHPSSSSFMLSPPSFVADDDSNGGWPQFPLNNEHFDPQSMFDQPPSFKRARTSENNHFNPLPYPPMNSRMHHPQNPPSSRGGGTSHIFFKTRMCAKFKMGMCRNGENCNFAHGVEDMRQPPPNWQELIGLREEEQRPSGNWDDDQKIIHKMKLCKKYYNGEQCPYGERCNFLHEDPSKFRDDAGKCRESSAISLVANGSPKSHMNGSNNSDSNKALSTGCDGNLRSNGKAPFFKTKLCTKWETTGHCPFADKCHFAHGQAELQGPIGRTEAEAVGSFPTSTRATSLPVNDASPTNTASVPDSNEDEQNKKSLLKWKVNKKINRIYADWLDDVPLPR 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1071 393 PANTHER CCCH ZINC FINGER/TIS11-RELATED 54 388 IPR045877 GO:0003729
Sto12g1071 393 MobiDBLite consensus disorder prediction 332 367 - -
Sto12g1071 393 SUPERFAMILY CCCH zinc finger 143 176 IPR036855 GO:0046872
Sto12g1071 393 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 54 388 - -
Sto12g1071 393 SUPERFAMILY CCCH zinc finger 288 320 IPR036855 GO:0046872
Sto12g1071 393 MobiDBLite consensus disorder prediction 332 359 - -
Sto12g1071 393 Pfam CCCH-type zinc finger 209 230 IPR041367 -
Sto12g1071 393 ProSiteProfiles Zinc finger C3H1-type profile. 205 233 IPR000571 GO:0046872
Sto12g1071 393 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 290 316 IPR000571 GO:0046872
Sto12g1071 393 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 146 170 IPR000571 GO:0046872
Sto12g1071 393 SUPERFAMILY CCCH zinc finger 205 232 IPR036855 GO:0046872
Sto12g1071 393 ProSiteProfiles Zinc finger C3H1-type profile. 289 317 IPR000571 GO:0046872
Sto12g1071 393 SMART c3hfinal6 205 232 IPR000571 GO:0046872
Sto12g1071 393 SMART c3hfinal6 289 316 IPR000571 GO:0046872
Sto12g1071 393 SMART c3hfinal6 145 171 IPR000571 GO:0046872
Sto12g1071 393 Gene3D - 283 321 - -
Sto12g1071 393 Gene3D - 202 234 - -
Sto12g1071 393 Gene3D - 140 176 - -
Sto12g1071 393 MobiDBLite consensus disorder prediction 122 141 - -
Sto12g1071 393 ProSiteProfiles Zinc finger C3H1-type profile. 145 172 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1071 Sto-Chr12 6719340 6725938 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1071 291 325 C3H Transcription Factor Family AT1G68200 57.143 5.17e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto12g1071 zf-CCCH 9.3e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1071 - - aprc:113846184 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1071 12 6719340 6725938 Sto12g1071 12 6719340 6725938 ECH