Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1053 ATGGATAAGAAAAAGGTGGCGGTTCCGCTTGTTTGCCACGGCCATTCCCGGCCTGTAGTGGATCTCTTTTACAGTCCTGTTACGCCCGATGGATTTTTTCTCATCAGCGCAAGCAAGGACTCTAGTCCTATGCTTAGAAATGGAGAGACTGGAGATTGGATTGGAACATTTGAAGGGCACAAAGGTGCAGTATGGAGTTGCTGCTTGGATACAAATGCTTTACGTGCTGCTACTGCTTCCGCTGATTTTTCAACGAAAGTTTGGGACGCATTAACCGGAGATGAATTACACTCATTTGAACATAAGCACATTGTTCGCGCCTGTGCTTTTTCTGAGGATACACACCTTTTACTCACTGGGGGAGTAGAGAAGATTCTCCGAATTTATGATATGAATCGTCCTGATGCACCGCCCAGAGAAGTTGACAAGTCCCCTGGTTCAGTCAGAACTGTTGCATGGCTTCACAGCGATCAGACTATATTGAGTTCTTGTACTGATATGGGAGGTGTGAGGTTATGGGATCTGAGAAGTGGTAAAATAGTCCAGACACTCGAGACCAAGTCATCTGTAACCAGTGCTGAAGTGAGTCAGGATGGTCGTTACATCACAACTGCTGATGGTTCTACTGTTAAGTTTTGGGATGCAAATTACTATGGACTGGTGAAGAGCTATGATATGCCATGCACTGTTGAATCAGCTTCATTGGAACCAAAGTATGGGAATAAATTTATTGCCGGGGGAGAAGATATGTGGGTTCATGTTTTTGATTTCCATACTGGCAATGAGATTGCATGCAACAAGGGCCACCATGGTCCTGTACACTGTGTACGTTTCTCTCCTGGGGGAGAATCATATGCCTCAGGATCTGAAGATGGAACCATCAGAATATGGCAGACTGGCCCGTTGACCCATGATGAATCAGAGTCCATATCTGCAAATGGATCAATTGCGAAGGATGAGGGGAAATCCAAAGAAAAGGAAGAGGCAGTGGAGGAATAA 999 0.4525 MDKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAATASADFSTKVWDALTGDELHSFEHKHIVRACAFSEDTHLLLTGGVEKILRIYDMNRPDAPPREVDKSPGSVRTVAWLHSDQTILSSCTDMGGVRLWDLRSGKIVQTLETKSSVTSAEVSQDGRYITTADGSTVKFWDANYYGLVKSYDMPCTVESASLEPKYGNKFIAGGEDMWVHVFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPLTHDESESISANGSIAKDEGKSKEKEEAVEE 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1053 332 MobiDBLite consensus disorder prediction 318 332 - -
Sto12g1053 332 MobiDBLite consensus disorder prediction 298 332 - -
Sto12g1053 332 SUPERFAMILY WD40 repeat-like 4 301 IPR036322 GO:0005515
Sto12g1053 332 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 298 IPR001680 GO:0005515
Sto12g1053 332 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 98 IPR001680 GO:0005515
Sto12g1053 332 PANTHER OS02G0205400 PROTEIN 1 328 - -
Sto12g1053 332 MobiDBLite consensus disorder prediction 298 316 - -
Sto12g1053 332 SMART WD40_4 177 214 IPR001680 GO:0005515
Sto12g1053 332 SMART WD40_4 50 89 IPR001680 GO:0005515
Sto12g1053 332 SMART WD40_4 5 47 IPR001680 GO:0005515
Sto12g1053 332 SMART WD40_4 217 256 IPR001680 GO:0005515
Sto12g1053 332 SMART WD40_4 134 174 IPR001680 GO:0005515
Sto12g1053 332 SMART WD40_4 92 130 IPR001680 GO:0005515
Sto12g1053 332 SMART WD40_4 259 298 IPR001680 GO:0005515
Sto12g1053 332 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 298 - -
Sto12g1053 332 Gene3D - 9 324 IPR015943 GO:0005515
Sto12g1053 332 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 328 - -
Sto12g1053 332 CDD WD40 14 298 - -
Sto12g1053 332 Pfam WD domain, G-beta repeat 94 130 IPR001680 GO:0005515
Sto12g1053 332 Pfam WD domain, G-beta repeat 265 297 IPR001680 GO:0005515
Sto12g1053 332 Pfam WD domain, G-beta repeat 179 214 IPR001680 GO:0005515
Sto12g1053 332 Pfam WD domain, G-beta repeat 54 89 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1053 9 296 Eukaryotic Initiation Factors Gene Family AT2G46290 28.221 3.53e-39 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1053 K13137 - gmx:100818422 660.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1053 12 6620484 6623514 Sto12g1053 12 6620484 6623514 ECH