Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1049 ATGAAGGACCCAGAAGAAGATCAAGTTAAATCCAGAAAGCCTATTACAGATCgtaggagaagaggaaggagaagaagccaaGAAAAAGGGGTTCATTTACAACTCAACCCCTCTGCTTCTTCTTGCAAGAGCCTTGTGTTCCACCCTAGGCCAGGCTATGGCCAGCTTGGGACAAAGTGTGTGGTCAAAGCCAACCACTTTCTCGCAGATATATCAGCTTCAGACTTGAGCCATTACAGTGTTAAGATAACACCTGAAGTTACTTGTCGTAAAATAAGCAAAGCTATCATAGCTGAGTTGGTGAGGCTTCACAGAAATACAGACTTGGGGATGAGGCTTCCTGTTTATGATGGAGGAAGGAATCTTTACACTGCTGGCTTGCTTCCTTTTGCACACAAAGAGTTCTCCATAATACTAACCCAAGATGATGAGGCTACTGGTATCACCAGGGAAAGAGAATTTAGAGTGAGAATCAAGTTTGCAGCTCGTGTTAGCATGCATCAACTACGCGAGCTTCTTAGTGGGAAACAAGTAGACACTCCACAAGAAGCACTTACCATCATTGATATTGTTTATGTATCGGTTGGAAGGTTTCTGTATTCTGGTGATATCAAAAAACCACAGCAGCTAGGTGGTGGCTTGGAATCATGGCGTGGCTTCTACCAGAGTATAAGGCCTACTCAGATGGGGTTGTCACTTAACATTGACATGTCATCAATGGCTTTTATTGAACCACTCCCTGTGATTGATTTTGTTGCACAAATTCTGGGTAAAGATGTGCATTCAAAGCCAATGTCAGATGCAGATCGTGTCAAGATCAAGAAAGCCCTGAGAGGTGTGAAAGTTGAAGTGACACATAGAGGAAATGTCCGAAGGAAGTATAGGATTTCAGGACTCACATCACAGCCTACAAGGGAGCTTATATTCCCTCTTGATGAGCAAATGAACATGAAATCAGTAGTTGATTATTTCCGAGAGATGTATGGATATACAATTAAGTATTCTCATTTACCATGCCTGCAAGTAGGGAATGAAAAGAAGGTGAACTATTTGCCAATGGAGGCATGCAAGATAGTTGGTGGCCAGAGATATACCAAAGGTCTAAACGAAAAGCAGATAACTTCTCTGCTAAAGGTTTCATGCCAGAGACCCCGGGAACAAGAACTAGACATTCTACAGACAATTCAACAAAATGATTATGAGCATAATCCCTATGCAAAGGAATTTGGTATCAACATAGACGAAAAGCTTACATCAGTCGAGGCTCGGGTTTTGCCTGCTCCATGGTTGAAATATAATGATACTGGAAGGGAGAAAGAGTACTTGCCTCAAGTTGGTCAGTGGAATATGATGAACAAGAAAGTTATAAATGGAAGCACAGTAAGATATTGGGCATGTATCAATTTCTCACGAAGCGTCCAAGAAAGTACAGCTCGTGGTTTTTGCCAACAATTGGTTCAAATGTGCCAAATCTCAGGCATGGAATTCAGTCAGGAGCCAGTGATTCCTATATATTCAGCAAGGCCAGATCAGGTGAAAAAGGCCTTGAAGTATGTCCATTGTGCTGCTTTAGACAAGCTTGGTGGGAAAGAGCTAGAGTTGCTAATTGCCATTCTTCCAGATAATAATGGCTCTCTGTATGGTGATCTCAAAAGGATATGTGAAACAGATCTGGGGTTGATTTCTCAGTGCTGCCTCACAAAACACGTCTTCAAGATTAATAGACAGTACCTGGCAAATGTAGCACTTAAAATCAATGTCAAGATGGGAGGAAGAAACACAGTACTTTTGGATGCTCTAAGTTGGAGGATTCCATTGGTTAGTGACATTCCAACAATAATATTTGGAGCTGATGTAACTCATCCAGAATCTGGAGAGGATTCTTCTCCATCCATTGCAGCTGTGGTAGCCTCCCAGGATTGGCCTGAAGTAACAAAGTATGCAGGACTAGTGTGTGCTCAGCCGCATCGCGAAGAACTCATTCAAGACCTCTTCAAAAGTTGGAAAGATCCTCAGCGCGGTATAGTTTATGGTGGCATGATCAGAGAGCTCTTACTCTCGTTTAAGAAGGCAACCGGACAAAAACCATTGAGGATAATATTTTACAGGGATGGGGTAAGTGAAGGACAATTCTACCAGGTTTTGCTGTATGAGCTTGATGCCATCCGAAAGGCTTGTGCATCTCTGGAACCTAGTTACCAACCTCCAGTAACATTTGTTGTGGTACAAAAGCGACATCACACTAGACTCTTCTCAAACAATCATGATGACAGAAACAGTACTGACAGGAGTGGCAACATCTTACCAGGCACTGTGGTGGATTCTAAGATCTGTCATCCCACAGAATTTGACTTCTACTTATGCAGTCATGCAGGAATACAGGGCACAAGTAGACCAGCTCACTATCATGTCCTATGGGATGAGAACAAATTCACAGCAGATGAGATTCAATCTTTAACCAACAACTTATGCTACACGTATGCAAGATGTACACGATCTGTTTCTGTAGTGCCTCCAGCATACTATGCTCATCTGGCAGCTTACAGAGCTCGATTCTACATGGAACCTGATGTACATGAGAATGCAAAAGCAAGAGGTGGAAGAGGAAAAGATGGAACAGTTAGGCCATTGCCAGCTCTGAAAGAGAAGGTGAAGAATGTAATGTTTTACTGTTGA 2676 0.4197 MKDPEEDQVKSRKPITDRRRRGRRRSQEKGVHLQLNPSASSCKSLVFHPRPGYGQLGTKCVVKANHFLADISASDLSHYSVKITPEVTCRKISKAIIAELVRLHRNTDLGMRLPVYDGGRNLYTAGLLPFAHKEFSIILTQDDEATGITREREFRVRIKFAARVSMHQLRELLSGKQVDTPQEALTIIDIVYVSVGRFLYSGDIKKPQQLGGGLESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKDVHSKPMSDADRVKIKKALRGVKVEVTHRGNVRRKYRISGLTSQPTRELIFPLDEQMNMKSVVDYFREMYGYTIKYSHLPCLQVGNEKKVNYLPMEACKIVGGQRYTKGLNEKQITSLLKVSCQRPREQELDILQTIQQNDYEHNPYAKEFGINIDEKLTSVEARVLPAPWLKYNDTGREKEYLPQVGQWNMMNKKVINGSTVRYWACINFSRSVQESTARGFCQQLVQMCQISGMEFSQEPVIPIYSARPDQVKKALKYVHCAALDKLGGKELELLIAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKINRQYLANVALKINVKMGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDSSPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKSWKDPQRGIVYGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFSNNHDDRNSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYMEPDVHENAKARGGRGKDGTVRPLPALKEKVKNVMFYC 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1049 891 SMART Piwi_a_2 534 855 IPR003165 GO:0003676
Sto12g1049 891 SMART PAZ_2_a_3 250 382 IPR003100 GO:0005515
Sto12g1049 891 Pfam Argonaute linker 1 domain 194 243 IPR014811 -
Sto12g1049 891 Pfam Mid domain of argonaute 443 519 IPR032473 -
Sto12g1049 891 PANTHER PROTEIN ARGONAUTE 10 23 890 - -
Sto12g1049 891 SUPERFAMILY Ribonuclease H-like 523 856 IPR012337 -
Sto12g1049 891 MobiDBLite consensus disorder prediction 1 33 - -
Sto12g1049 891 ProSiteProfiles PAZ domain profile. 246 360 IPR003100 GO:0005515
Sto12g1049 891 Pfam Piwi domain 535 854 IPR003165 GO:0003676
Sto12g1049 891 Gene3D - 603 891 IPR036397 GO:0003676
Sto12g1049 891 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 23 890 - -
Sto12g1049 891 Pfam Argonaute linker 2 domain 390 432 IPR032472 -
Sto12g1049 891 Gene3D paz domain 240 364 - -
Sto12g1049 891 SMART DUF1785_2 193 245 IPR014811 -
Sto12g1049 891 SUPERFAMILY PAZ domain 241 400 IPR036085 GO:0005515
Sto12g1049 891 Pfam N-terminal domain of argonaute 58 191 IPR032474 -
Sto12g1049 891 ProSiteProfiles Piwi domain profile. 534 855 IPR003165 GO:0003676
Sto12g1049 891 CDD Piwi_ago-like 404 854 IPR045246 -
Sto12g1049 891 Gene3D - 424 597 - -
Sto12g1049 891 CDD PAZ_argonaute_like 245 359 - -
Sto12g1049 891 Pfam PAZ domain 250 376 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1049 Sto-Chr12 6603288 6608659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1049 47 891 Eukaryotic Initiation Factors Gene Family AT5G43810 75.494 0.0 1393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1049 K11593 - gmx:100808457 1584.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1049 12 6603288 6608659 Sto12g1049 12 6603288 6608659 ECH